BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0170.p (240 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4G6R8.1 A4G6R8_HERAR Ribonuclease III EC=3.1.26.3 401 e-110 A6SXR3.1 A6SXR3_JANMA Ribonuclease III EC=3.1.26.3 393 e-107 D8ISA0.1 D8ISA0_HERSS Ribonuclease 3 EC=3.1.26.3 385 e-105 Q46Z18.1 RNC_CUPPJ Ribonuclease 3 EC=3.1.26.3 329 3e-88 Q1LKN1.1 RNC_RALME Ribonuclease 3 EC=3.1.26.3 327 1e-87 >A4G6R8.1 A4G6R8_HERAR Ribonuclease III EC=3.1.26.3 Length = 328 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/205 (93%), Positives = 199/205 (97%) Query: 1 MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60 MD +LQNRLGH FKDA L+QQALTHRSHSS+HNERLEFLGDSILNCVVASLLFDRY+KI Sbjct: 1 MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRL+LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180 FLDAGFNAARDVIR+LYIPILD+VDPKTLGKDAKTLLQEYLQGKKI LPQYNVVATHGAA Sbjct: 121 FLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180 Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205 HNQEFEIECLVPKL+IQVFGTG SR Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSR 205 >A6SXR3.1 A6SXR3_JANMA Ribonuclease III EC=3.1.26.3 Length = 322 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/205 (91%), Positives = 196/205 (95%) Query: 1 MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60 MD +LQNRLGH FKDA LLQQALTHRSH S+HNERLEFLGDSILNCVVASLLFDRY+KI Sbjct: 1 MDLTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRL+LS FLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180 FLDAGF+ ARDVIR+LYIPILD+VDPKTLGKDAKTLLQEYLQGKKI LPQYNVVATHGAA Sbjct: 121 FLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180 Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205 HNQEFEIECLVPKL+IQVFGTG SR Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSR 205 >D8ISA0.1 D8ISA0_HERSS Ribonuclease 3 EC=3.1.26.3 Length = 319 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/205 (88%), Positives = 198/205 (96%) Query: 1 MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60 MDP +LQ RLGH FKDA+LLQQALTHRSHS+LHNERLEFLGDS+LNCVVASLLF+RY+KI Sbjct: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 Query: 61 DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 DEGDLSRLRANLVKQQSLYEIAQRL+LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180 FLD+GF AAR VIRSLY+P+L+ VDP+TLGKDAKTLLQE+LQGKKIPLPQYNV+ATHGAA Sbjct: 121 FLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 180 Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205 H+QEFEIECLVPKL+IQVFGTG SR Sbjct: 181 HSQEFEIECLVPKLDIQVFGTGGSR 205 >Q46Z18.1 RNC_CUPPJ Ribonuclease 3 EC=3.1.26.3 Length = 256 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/201 (77%), Positives = 176/201 (87%) Query: 5 VLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKIDEGD 64 LQ RLG+ F LLQQALTHRSHS+ HNERLEFLGDS+LNC VA +LF + K+DEGD Sbjct: 5 ALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDEGD 64 Query: 65 LSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDA 124 LSR+RANLVKQQ+LYEIAQ L LS+ LRLGEGELKSGGFRRPSILAD LEA+ GA+FLDA Sbjct: 65 LSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIVGAVFLDA 124 Query: 125 GFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAAHNQE 184 GF AAR +IR LYIPIL+ VDP+TLGKDAKTLLQEYLQG KI LPQYNV+ATHGAAH+Q+ Sbjct: 125 GFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAAHSQQ 184 Query: 185 FEIECLVPKLEIQVFGTGPSR 205 FE+EC+VPKLE++VFGTG SR Sbjct: 185 FEVECMVPKLEVRVFGTGASR 205 >Q1LKN1.1 RNC_RALME Ribonuclease 3 EC=3.1.26.3 Length = 256 Score = 327 bits (838), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 155/201 (77%), Positives = 176/201 (87%) Query: 5 VLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKIDEGD 64 LQ RLG+ F LLQQALTHRSHS+ HNERLEFLGDS+LNC VA +LF + K+DEGD Sbjct: 5 ALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDEGD 64 Query: 65 LSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDA 124 LSR+RANLVKQQ+LYEIAQ L LS LRLGEGELKSGGFRRPSILAD LEA+ GA+FLDA Sbjct: 65 LSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIVGAVFLDA 124 Query: 125 GFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAAHNQE 184 GF+AAR +IR LYIPIL+ VDP+TLGKDAKTLLQEYLQG KI LPQYNV+ATHGAAH+Q+ Sbjct: 125 GFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAAHSQQ 184 Query: 185 FEIECLVPKLEIQVFGTGPSR 205 FE+EC+VPKLE++VFGTG SR Sbjct: 185 FEVECIVPKLEVRVFGTGASR 205