BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0164.p         (75 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IS94.1 D8IS94_HERSS Transmembrane sigma-E factor negative regu...    99   3e-19
B9TF95.1 B9TF95_RICCO Putative uncharacterized protein                 98   4e-19
A6SXQ6.1 A6SXQ6_JANMA Anti sigma-E protein                             83   1e-14
A4G6S5.1 A4G6S5_HERAR Putative anti sigma-E protein RseA, N-term...    81   5e-14

>D8IS94.1 D8IS94_HERSS Transmembrane sigma-E factor negative regulatory
           transcription regulator protein
          Length = 232

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 2/68 (2%)

Query: 9   VPSAITTVASSSA-PQGAATISSLAQQGEVARDPRIDDYLLAHQRFSPSMYSSTQYARSA 67
           VPSAI TV++++A PQ    +SSLAQQGEV RDPRIDDYL AHQRFSPS YSS QYARSA
Sbjct: 166 VPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYARSA 224

Query: 68  AFAIDSDK 75
           AF+ D+DK
Sbjct: 225 AFSTDADK 232


>B9TF95.1 B9TF95_RICCO Putative uncharacterized protein
          Length = 111

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 2/68 (2%)

Query: 9   VPSAITTVASSSA-PQGAATISSLAQQGEVARDPRIDDYLLAHQRFSPSMYSSTQYARSA 67
           VPSAI TV++++A PQ    +SSLAQQGEV RDPRIDDYL AHQRFSPS YSS QYARSA
Sbjct: 45  VPSAIATVSTTNANPQNVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYARSA 103

Query: 68  AFAIDSDK 75
           AF+ D+DK
Sbjct: 104 AFSTDADK 111


>A6SXQ6.1 A6SXQ6_JANMA Anti sigma-E protein
          Length = 182

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 2/69 (2%)

Query: 9   VPSAITTVAS--SSAPQGAATISSLAQQGEVARDPRIDDYLLAHQRFSPSMYSSTQYARS 66
           VP  +T+ A   ++A     TI+  ++ GEV RDPRIDDYLLAHQRFSPS+YSS QYAR+
Sbjct: 114 VPQMMTSNAPVVTTAAVAPETITVASKDGEVLRDPRIDDYLLAHQRFSPSVYSSAQYARA 173

Query: 67  AAFAIDSDK 75
           A FA+DSDK
Sbjct: 174 ATFAVDSDK 182


>A4G6S5.1 A4G6S5_HERAR Putative anti sigma-E protein RseA, N-terminal
          Length = 186

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 24  GAATISSLAQQGEVARDPRIDDYLLAHQRFSPSMYSSTQYARSAAFAIDSDK 75
           G  T++  + +G+V RDPRID+YLLAHQRFSPS+YS+ QYARSA FA+DSDK
Sbjct: 135 GPETVTVASHEGDVLRDPRIDEYLLAHQRFSPSVYSTAQYARSATFAVDSDK 186