BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0131.p (295 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9C1J8.1 B9C1J8_9BURK LysR substrate binding domain protein 379 e-103 B9BHJ5.1 B9BHJ5_9BURK LysR substrate binding domain protein 379 e-103 B9AZQ3.1 B9AZQ3_9BURK LysR substrate binding domain protein 377 e-103 A2VY99.1 A2VY99_9BURK Transcriptional regulator 375 e-102 B1K300.1 B1K300_BURCC Transcriptional regulator, LysR family 375 e-102 >B9C1J8.1 B9C1J8_9BURK LysR substrate binding domain protein Length = 303 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/296 (61%), Positives = 225/296 (76%), Gaps = 4/296 (1%) Query: 1 MDRLQAMEVFVRVAELGSFSKTAEQMGLPAATVTNAIQAVEKRVGVRLLQRTTRKVTLTD 60 MD LQAM +F RVA LGSF+K AEQ+ LP TV+NA+Q +EK + VRLLQRTTR+V LT Sbjct: 1 MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTA 60 Query: 61 DGAAYLERCQRLLAEFQDVENLFD--NEQPQGVVRVDLPERLAHRNVIPRLPEFFARYPD 118 +G Y ERC RLLA+ D E LF+ P+GVVRVDLPER A VIP LP+F ARYPD Sbjct: 61 EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD 120 Query: 119 IRVKLNASDRFVDLIGEGVDCVVRVGILSDSTLIARGIGAMEQITCASKAYLDRHGRPRT 178 +RV ++ +DRFVDL+ +G+DC VRVG+LSD++L+AR IG M Q+ CAS+ Y RHG PRT Sbjct: 121 LRVVVSTTDRFVDLVADGIDCAVRVGMLSDTSLVARRIGEMAQLNCASRDYAARHGLPRT 180 Query: 179 LAELEQHTMINYFSSRTGRELPWEY--MQNGELKTLKLRGQVSVASSEAYMACCLAGLGL 236 EL H + YFSSRTGREL WEY M G++ T+K+R VSV SS+AY+ACC+AGLG+ Sbjct: 181 PDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGM 240 Query: 237 VQAPLLGAEDLLAQGVIEEVLPEFKPPPLPVAIVYSHNRHLSPRVRVFVDWLAEIL 292 +QAP G E LLA G + EVLPE++ PPLPVA+V+ H RHL+PRVR+FVDWLAE L Sbjct: 241 IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETL 296 >B9BHJ5.1 B9BHJ5_9BURK LysR substrate binding domain protein Length = 303 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/296 (61%), Positives = 225/296 (76%), Gaps = 4/296 (1%) Query: 1 MDRLQAMEVFVRVAELGSFSKTAEQMGLPAATVTNAIQAVEKRVGVRLLQRTTRKVTLTD 60 MD LQAM +F RVA LGSF+K AEQ+ LP TV+NA+Q +EK + VRLLQRTTR+V LT Sbjct: 1 MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTA 60 Query: 61 DGAAYLERCQRLLAEFQDVENLFD--NEQPQGVVRVDLPERLAHRNVIPRLPEFFARYPD 118 +G Y ERC RLLA+ D E LF+ P+GVVRVDLPER A VIP LP+F ARYPD Sbjct: 61 EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD 120 Query: 119 IRVKLNASDRFVDLIGEGVDCVVRVGILSDSTLIARGIGAMEQITCASKAYLDRHGRPRT 178 +RV ++ +DRFVDL+ +G+DC VRVG+LSD++L+AR IG M Q+ CAS+ Y RHG PRT Sbjct: 121 LRVVVSTTDRFVDLVADGIDCAVRVGMLSDTSLVARRIGEMAQLNCASRDYAARHGLPRT 180 Query: 179 LAELEQHTMINYFSSRTGRELPWEY--MQNGELKTLKLRGQVSVASSEAYMACCLAGLGL 236 EL H + YFSSRTGREL WEY M G++ T+K+R VSV SS+AY+ACC+AGLG+ Sbjct: 181 PDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGM 240 Query: 237 VQAPLLGAEDLLAQGVIEEVLPEFKPPPLPVAIVYSHNRHLSPRVRVFVDWLAEIL 292 +QAP G E LLA G + EVLPE++ PPLPVA+V+ H RHL+PRVR+FVDWLAE L Sbjct: 241 IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETL 296 >B9AZQ3.1 B9AZQ3_9BURK LysR substrate binding domain protein Length = 303 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/296 (61%), Positives = 225/296 (76%), Gaps = 4/296 (1%) Query: 1 MDRLQAMEVFVRVAELGSFSKTAEQMGLPAATVTNAIQAVEKRVGVRLLQRTTRKVTLTD 60 MD LQAM +F RVA LGSF+K AEQ+ LP TV+NA+Q +EK + VRLLQRTTR+V LT Sbjct: 1 MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTV 60 Query: 61 DGAAYLERCQRLLAEFQDVENLFD--NEQPQGVVRVDLPERLAHRNVIPRLPEFFARYPD 118 +G Y ERC RLLA+ D E LF+ P+GVVRVDLPER A +VIP LP+F ARYPD Sbjct: 61 EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHHVIPALPDFHARYPD 120 Query: 119 IRVKLNASDRFVDLIGEGVDCVVRVGILSDSTLIARGIGAMEQITCASKAYLDRHGRPRT 178 +RV ++ +DRFVDL+ +G+DC VRVG LSD++L+AR IG M Q+ CAS+ Y RHG PRT Sbjct: 121 LRVVISMTDRFVDLVADGIDCAVRVGTLSDTSLVARRIGEMAQLNCASRDYAARHGLPRT 180 Query: 179 LAELEQHTMINYFSSRTGRELPWEY--MQNGELKTLKLRGQVSVASSEAYMACCLAGLGL 236 EL H + YFSSRTGREL WEY M G++ T+K+R VSV SS+AY+ACC+AGLG+ Sbjct: 181 PDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGM 240 Query: 237 VQAPLLGAEDLLAQGVIEEVLPEFKPPPLPVAIVYSHNRHLSPRVRVFVDWLAEIL 292 +QAP G E LLA G + EVLPE++ PPLPVA+V+ H RHL+PRVR+FVDWLAE L Sbjct: 241 IQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETL 296 >A2VY99.1 A2VY99_9BURK Transcriptional regulator Length = 303 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/296 (61%), Positives = 223/296 (75%), Gaps = 4/296 (1%) Query: 1 MDRLQAMEVFVRVAELGSFSKTAEQMGLPAATVTNAIQAVEKRVGVRLLQRTTRKVTLTD 60 MD LQAM F RVA LGSF+K AEQ+ LP TV+NA+Q +EK + +RLLQRTTR+V LT Sbjct: 1 MDHLQAMRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTA 60 Query: 61 DGAAYLERCQRLLAEFQDVENLFDNE--QPQGVVRVDLPERLAHRNVIPRLPEFFARYPD 118 +GA Y ERC RLLA+ DVE LF++ P+GV+RVDLPER A VIP LP+F ARYPD Sbjct: 61 EGATYYERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120 Query: 119 IRVKLNASDRFVDLIGEGVDCVVRVGILSDSTLIARGIGAMEQITCASKAYLDRHGRPRT 178 +RV ++ +DRFVDL+ +G+DC VRVG+LSD++L+AR +G M QI CAS AYL RHG PR+ Sbjct: 121 LRVVISTTDRFVDLVADGIDCAVRVGVLSDTSLVARRVGEMAQINCASPAYLARHGTPRS 180 Query: 179 LAELEQHTMINYFSSRTGRELPWEY--MQNGELKTLKLRGQVSVASSEAYMACCLAGLGL 236 EL H + YFSSRTGREL WEY M +GEL +K+ VSV SS+AY+ACCLAGLGL Sbjct: 181 PDELPDHVAVGYFSSRTGRELDWEYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGL 240 Query: 237 VQAPLLGAEDLLAQGVIEEVLPEFKPPPLPVAIVYSHNRHLSPRVRVFVDWLAEIL 292 +QAP G LLA G + EVLPE+ PLPV++V+ RHL+PRVR+FVDWLAE L Sbjct: 241 IQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPTGRHLAPRVRIFVDWLAETL 296 >B1K300.1 B1K300_BURCC Transcriptional regulator, LysR family Length = 303 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/296 (61%), Positives = 223/296 (75%), Gaps = 4/296 (1%) Query: 1 MDRLQAMEVFVRVAELGSFSKTAEQMGLPAATVTNAIQAVEKRVGVRLLQRTTRKVTLTD 60 MD LQAM F RVA LGSF+K AEQ+ LP TV+NA+Q +EK + +RLLQRTTR+V LT Sbjct: 1 MDHLQAMRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTA 60 Query: 61 DGAAYLERCQRLLAEFQDVENLFDNE--QPQGVVRVDLPERLAHRNVIPRLPEFFARYPD 118 +GA Y ERC RLLA+ DVE LF++ P+GV+RVDLPER A VIP LP+F ARYPD Sbjct: 61 EGATYYERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120 Query: 119 IRVKLNASDRFVDLIGEGVDCVVRVGILSDSTLIARGIGAMEQITCASKAYLDRHGRPRT 178 +RV ++ +DRFVDL+ +G+DC VRVG+LSD++L+AR +G M QI CAS AYL RHG PR+ Sbjct: 121 LRVVISTTDRFVDLVADGIDCAVRVGVLSDTSLVARRVGEMAQINCASPAYLARHGTPRS 180 Query: 179 LAELEQHTMINYFSSRTGRELPWEY--MQNGELKTLKLRGQVSVASSEAYMACCLAGLGL 236 EL H + YFSSRTGREL WEY M +GEL +K+ VSV SS+AY+ACCLAGLGL Sbjct: 181 PDELPDHVAVGYFSSRTGRELDWEYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGL 240 Query: 237 VQAPLLGAEDLLAQGVIEEVLPEFKPPPLPVAIVYSHNRHLSPRVRVFVDWLAEIL 292 +QAP G LLA G + EVLPE+ PLPV++V+ RHL+PRVR+FVDWLAE L Sbjct: 241 IQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPTGRHLAPRVRIFVDWLAETL 296