BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0110.p (299 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZT2.1 D8IZT2_HERSS ABC-type amino acid transport system, perm... 483 e-134 F1W250.1 F1W250_9BURK LivM 450 e-124 D8NFK1.1 D8NFK1_RALSO Leucine/isoleucine/valine transporter perm... 394 e-108 B5SAN7.1 B5SAN7_RALSO Amino-acid transmembrane protein 393 e-107 A3S083.1 A3S083_RALSO LivM 393 e-107 >D8IZT2.1 D8IZT2_HERSS ABC-type amino acid transport system, permease component protein Length = 288 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/296 (89%), Positives = 279/296 (94%), Gaps = 8/296 (2%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEWWDGFWATYNTVIFS+GVNAMLALSIYVTLSCGLLSLANAAFMGIGAY ASL+TMQ Sbjct: 1 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEITGGPMGL 123 +PFP+ALAAGGVLPALVAL+IGIPTLRLSGVYLAMATLGFGEVVRV+VLN++ITGGPMGL Sbjct: 61 MPFPIALAAGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDITGGPMGL 120 Query: 124 NGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NGVPP+TEWWHIVLLLGVT+Y LAR+RRSKIGRAFEAIKEDE+AARLMGVNVAGYKLLAF Sbjct: 121 NGVPPITEWWHIVLLLGVTIYVLARLRRSKIGRAFEAIKEDEIAARLMGVNVAGYKLLAF 180 Query: 184 VIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 VIGAAIAGVAG LNAH+TFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP Sbjct: 181 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 240 Query: 244 EVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGNSNNSASKKVN 299 EVLRHFKDFRLA NGLILILVVLYLPKGIWDPRRIRAF+ R +A KKV Sbjct: 241 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGR--------NAEKKVK 288 >F1W250.1 F1W250_9BURK LivM Length = 289 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/288 (78%), Positives = 258/288 (89%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEWW FW+TYNTVIFS+GVNAMLALSIY+TLSCGLLSLANAAFMGIGAY A+++TMQ Sbjct: 1 MEWWQAFWSTYNTVIFSIGVNAMLALSIYLTLSCGLLSLANAAFMGIGAYAAAMLTMQGD 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEITGGPMGL 123 + FP+AL A GVLPALVAL+IGIPTLRLSGVYLAMATLGFGEVVRV+VLN+++TGGPMGL Sbjct: 61 VSFPLALLAAGVLPALVALIIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDVTGGPMGL 120 Query: 124 NGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NG+P TE+WHI+LLL +T+Y LAR+RRSKIGRAFEAIK DEVAA+LMG+NVAGYKLLAF Sbjct: 121 NGIPLKTEFWHILLLLALTLYVLARMRRSKIGRAFEAIKADEVAAQLMGINVAGYKLLAF 180 Query: 184 VIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 V GA IAGVAG LNAHYTFTIGP NY FENAVDILTMAVFGGT+NLIGP +G+TIL+LLP Sbjct: 181 VTGAVIAGVAGGLNAHYTFTIGPGNYAFENAVDILTMAVFGGTANLIGPTLGATILTLLP 240 Query: 244 EVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGNSN 291 EVLR FK FRLA NGLILI+V+LYLPKGIWDP R+RA +R ++ Sbjct: 241 EVLREFKHFRLAFNGLILIVVILYLPKGIWDPARMRALFKRTSTSKKE 288 >D8NFK1.1 D8NFK1_RALSO Leucine/isoleucine/valine transporter permease subunit (Transmembrane abc transporter) Length = 299 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/296 (66%), Positives = 244/296 (82%), Gaps = 2/296 (0%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAY ++L+TM A Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEI-TGGPMG 122 +PFPVAL G + PA+VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVVIGRPTLRLSGVYLAMATLGFGEVVRVLILNTESWTGGALG 120 Query: 123 LNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK+GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARLRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 FV+GA IAG+AGALNAH TF IGP+ +GF+ V+ILTMA+ GGTS L GP++GS ILSLL Sbjct: 181 FVLGAMIAGLAGALNAHLTFFIGPSEFGFDRGVEILTMAILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRI-RAFMQRRNSGNSNNSASKK 297 PE+LR FKDFRL NGLIL+L+VL+LPKGIWDP R R F +R SA+ Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWFGMKRGGTMPGASAASN 296 >B5SAN7.1 B5SAN7_RALSO Amino-acid transmembrane protein Length = 299 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/287 (66%), Positives = 239/287 (83%), Gaps = 1/287 (0%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAY ++L+TM A Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNME-ITGGPMG 122 +PFPVAL G + PA+VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVIIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG 120 Query: 123 LNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK+GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 F +GA IAG+AGALNAH TF IGPN +GF+ V+ILTM + GGTS L GP++GS ILSLL Sbjct: 181 FTLGAVIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGN 289 PE+LR FKDFRL NGLIL+L+VL+LPKGIWDP R ++ + G Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWLGMKRGGT 287 >A3S083.1 A3S083_RALSO LivM Length = 299 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/287 (66%), Positives = 239/287 (83%), Gaps = 1/287 (0%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAY ++L+TM A Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNME-ITGGPMG 122 +PFPVAL G + PA+VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVIIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG 120 Query: 123 LNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK+GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 F +GA IAG+AGALNAH TF IGPN +GF+ V+ILTM + GGTS L GP++GS ILSLL Sbjct: 181 FTLGAVIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGN 289 PE+LR FKDFRL NGLIL+L+VL+LPKGIWDP R ++ + G Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWLGMKRGGT 287