BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0107.p (509 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRP6.1 D8IRP6_HERSS Deoxyribodipyrimidine photolyase (Photorea... 715 0.0 A6T294.1 A6T294_JANMA Deoxyribodipyrimidine photo-lyase 679 0.0 A4G8M2.1 A4G8M2_HERAR Deoxyribodipyrimidine photolyase EC=4.1.99.3 673 0.0 Q474U8.1 Q474U8_CUPPJ Deoxyribodipyrimidine photo-lyase type I E... 634 e-179 F1VXJ0.1 F1VXJ0_9BURK Deoxyribodipyrimidine photolyase 633 e-179 >D8IRP6.1 D8IRP6_HERSS Deoxyribodipyrimidine photolyase (Photoreactivation) protein EC=4.1.99.3 Length = 494 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/503 (70%), Positives = 398/503 (79%), Gaps = 11/503 (2%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 MP FD SLVWFRRDLR+ DHAALY AL QS+QV CVFV+D DIL AL A+G+ DRRIDF Sbjct: 1 MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 ++A +AELD ALR G LIV H A IPALAAEL V AV+ N DYE Sbjct: 61 LLASVAELDEALRHA-----------GGGLIVLHGSAVTQIPALAAELDVQAVYANTDYE 109 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 P A++RDAAV + L K G QLL+ KDQVIFEKDEVL+ + +PFSVFTPYKNAWM+KL+ Sbjct: 110 PAAVERDAAVAQTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAA 169 Query: 181 GGDFYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLED 240 GDF+LKPYPV+ YL LA P K ALP+ QLGF PSNL++L+IPTGMSGA LL++ Sbjct: 170 DGDFFLKPYPVEKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDE 229 Query: 241 FLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSE 300 FL R+G YG RDFPAVKGPSYLSVHLRFGTISIRTLARAA+ AM G+G GA VWLSE Sbjct: 230 FLDRIGSYGAARDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSE 289 Query: 301 LVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQ 360 L WRDFYFMIL HHPRV +FK +YDAIQWE G A +FA WCEGRTGYPLVDAAM Q Sbjct: 290 LTWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQ 349 Query: 361 LNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDA 420 +NQ+GYMHNRLRMV ASFLTKDLGIDWRWGE+YFA LNDFDL+ANNGGWQWASSSGCDA Sbjct: 350 INQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDA 409 Query: 421 QPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDY 480 QPYFRIFNP+TQSEKFD +GKFIRRYLPQLA L +K IHAPW D AGV +G++Y Sbjct: 410 QPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNY 469 Query: 481 PEPMVDHAEARKRTLLRYAVVKK 503 P P+VDHA+AR+RTL RYAVVKK Sbjct: 470 PRPIVDHAQARERTLARYAVVKK 492 >A6T294.1 A6T294_JANMA Deoxyribodipyrimidine photo-lyase Length = 495 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/509 (66%), Positives = 383/509 (75%), Gaps = 16/509 (3%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 MP F+ +LVWFRRDLR DHAAL+ AL+Q +QV+C F++DR ILD L + DRR++F Sbjct: 1 MPLFEKTLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPS----TDRRVEF 56 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 I A + ELD ALRA L G LIVRHA A+Q IP LAAELGVDAVF NHDYE Sbjct: 57 IHASLQELDTALRA-----------LGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYE 105 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 PQAI RD AV L DGR+L T KD VIFEKDEVLS +G+PFSVFTPYKNAW+ KL Sbjct: 106 PQAIARDGAVAAALATDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTE 165 Query: 181 GGDFYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLED 240 + Y +D A AP + +P L +LGF +NL +L IPTGM G L +D Sbjct: 166 LAPADMPAYEIDTLRAHFAP-LPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDD 224 Query: 241 FLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSE 300 F+ R+ Y TRDFPAVKGPSYLSVHLRFGT+SIR L R A+DAMRIG G GA VWLSE Sbjct: 225 FIDRMPDYDSTRDFPAVKGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVWLSE 284 Query: 301 LVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQ 360 LVWRDFYFMIL+ HP V ER+FK DYDAI WE G HA E+F WC+GRTGYPLVDAAM Q Sbjct: 285 LVWRDFYFMILYQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQ 344 Query: 361 LNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDA 420 LNQTGYMHNRLRMVTASFL KDLGIDWRWGE+YFA+ LNDFDL+ANNGGWQWASSSGCDA Sbjct: 345 LNQTGYMHNRLRMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDA 404 Query: 421 QPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDY 480 QPYFRIFNP+TQSEKFD +GKFIRRYLPQL L K IHAPW PA L+ AG+ +G+DY Sbjct: 405 QPYFRIFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDY 464 Query: 481 PEPMVDHAEARKRTLLRYAVVKKDLGDED 509 P P++ H EAR RTLLRYAVVKK ++D Sbjct: 465 PHPLLQHDEARARTLLRYAVVKKVTVEDD 493 >A4G8M2.1 A4G8M2_HERAR Deoxyribodipyrimidine photolyase EC=4.1.99.3 Length = 493 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/505 (67%), Positives = 385/505 (76%), Gaps = 20/505 (3%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 M F+ +LVWFRRDLR DHAAL+ AL QS+QV+CVF++DR ILDAL +ADRR++F Sbjct: 1 MLRFEKTLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALP----RADRRVEF 56 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 I A + EL ALRA L G LIV+HA A+ IP LA ELGVDAVF NHDYE Sbjct: 57 IHASLLELAQALRA-----------LGGGLIVQHAWAETAIPELAIELGVDAVFANHDYE 105 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 PQAI RDA V L+ GR L T KDQV+FEK+EVL+ A +PFSVFTPYKNAW+ KL Sbjct: 106 PQAITRDAHVAAALQAAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAE 165 Query: 181 GGDFYLKPYPVDAYLAQLA--PPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLL 238 + L+PY +DAY + P SK +P+L LGF +NL DL IPTGM GA LL Sbjct: 166 SNEATLRPYEIDAYADRFVNLPESKF---PIPSLTDLGFEKTNLPDLNIPTGMQGAQDLL 222 Query: 239 EDFLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWL 298 + F R+ +Y TRDFPA+KGPSYLSVH+RFGT+SIR LAR A+DAMR G G GA VWL Sbjct: 223 DAFADRMQRYDQTRDFPALKGPSYLSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWL 282 Query: 299 SELVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAM 358 SELVWRDFYFMILF HP VV+ +FKADYDAI WE G HAR +F WC+G+TGYPLVDAAM Sbjct: 283 SELVWRDFYFMILFQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAM 342 Query: 359 LQLNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGC 418 QLNQTGYMHNRLRMVTASFL KDLGIDWRWGE YFA+ LNDFDL+ANNGGWQWASSSGC Sbjct: 343 AQLNQTGYMHNRLRMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGC 402 Query: 419 DAQPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGK 478 DAQPYFRIFNPITQSEKFD +GKFIRRYLPQLA L D+HIHAPW PA L+ AGV IG Sbjct: 403 DAQPYFRIFNPITQSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGN 462 Query: 479 DYPEPMVDHAEARKRTLLRYAVVKK 503 +YP P+V H EAR RTL RYAVVKK Sbjct: 463 NYPGPLVQHDEARARTLQRYAVVKK 487 >Q474U8.1 Q474U8_CUPPJ Deoxyribodipyrimidine photo-lyase type I EC=4.1.99.3 Length = 525 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 317/502 (63%), Positives = 370/502 (73%), Gaps = 17/502 (3%) Query: 4 FDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDFIMA 63 FD LVWFRRDLR DHAAL+ ALK ++V CVFV+DRDILD LLA GL+ DRR+DFI A Sbjct: 33 FDRGLVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLARGLKGDRRVDFIRA 92 Query: 64 CIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYEPQA 123 + ELDA LRA G LIV + A IPALA ELGV AVF NHDYEP A Sbjct: 93 SLIELDATLRAAG-----------GGLIVMNDSAASAIPALARELGVQAVFANHDYEPDA 141 Query: 124 IKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGPGGD 183 + RDAAV+ L D R L T KDQVIFE+DE+L+ G+PF+VFTPYKNAW+ + Sbjct: 142 VARDAAVRDSLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQ----P 197 Query: 184 FYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLEDFLP 243 F L+PYP++ YL LAP K LP+LE LGF PSNL ++ +PTG SG L E+F Sbjct: 198 FDLRPYPIEPYLHALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS 257 Query: 244 RLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDA-MRIGEGRRGAPVWLSELV 302 R+G YG RD+PA++GPSYLSVHLRFGT+SIRTLARAA A +R G GA WLSELV Sbjct: 258 RMGDYGRRRDYPALRGPSYLSVHLRFGTVSIRTLARAAHGAVLRGGADSAGAATWLSELV 317 Query: 303 WRDFYFMILFHHPRVVE-RSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQL 361 WRDFYFMIL HHPRV +F YD I+W G+ F W + TGYPLVDAAMLQ+ Sbjct: 318 WRDFYFMILHHHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQI 377 Query: 362 NQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDAQ 421 Q+GYMHNRLRMVTASFL KDLG+DWR GE YFAD LNDFD +ANNGGWQWA+S+GCDAQ Sbjct: 378 RQSGYMHNRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQ 437 Query: 422 PYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDYP 481 P+FRIFNP+TQSEKFD +G+FIR+YLPQLA LPDK++HAPW P DVL AAGVR+G++YP Sbjct: 438 PWFRIFNPVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYP 497 Query: 482 EPMVDHAEARKRTLLRYAVVKK 503 P+V H ARK TL RYAVVK+ Sbjct: 498 RPLVQHDVARKETLERYAVVKE 519 >F1VXJ0.1 F1VXJ0_9BURK Deoxyribodipyrimidine photolyase Length = 504 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 316/497 (63%), Positives = 367/497 (73%), Gaps = 17/497 (3%) Query: 7 SLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDFIMACIA 66 SL+WFRRDLR+ D AAL+ AL+QS+ V CVF++D DIL L + DRRI+F+ A + Sbjct: 14 SLIWFRRDLRVFDQAALHHALRQSRTVFCVFIFDSDILQHLP----EQDRRIEFLHASLT 69 Query: 67 ELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYEPQAIKR 126 EL L L GALIVRHA A + IPALA EL V+AVF NHDYEPQAI R Sbjct: 70 ELHEEL-----------VKLGGALIVRHARAVEAIPALARELDVEAVFINHDYEPQAIAR 118 Query: 127 DAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGPGGDFYL 186 DAA+ L++ L + KDQV+FE DEVLSLAG+PFSVFTPYKNAW+ +L D ++ Sbjct: 119 DAAIATALQQHDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHV 178 Query: 187 KPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLEDFLPRLG 246 + YPV+ + A H +PTL +LGF P+N L+IPTGMSG QL+++F+ R+ Sbjct: 179 RAYPVEPLADRFAVSPVAH--VMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFMERID 236 Query: 247 KYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSELVWRDF 306 KY TRDFPA+KGPSYLSVHLRFGT+SIR LAR A +A RI GA WL+ELVWRDF Sbjct: 237 KYKQTRDFPAIKGPSYLSVHLRFGTVSIRHLARRACEAARIAADASGANTWLAELVWRDF 296 Query: 307 YFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQLNQTGY 366 YFMIL HHPRVV +FK DYDAIQWE G A +F WC+GRTGYPLVDAAM Q+NQTGY Sbjct: 297 YFMILQHHPRVVHGAFKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGY 356 Query: 367 MHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDAQPYFRI 426 MHNRLRMVTA FL KDLGIDWR GE YFA+ L DFDLSANNGGWQWASSSGCDAQPYFRI Sbjct: 357 MHNRLRMVTACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRI 416 Query: 427 FNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDYPEPMVD 486 FNPITQSEKFD +G+FIRRYLPQLA L +K IHAPWL L AGV +G +YP P+V Sbjct: 417 FNPITQSEKFDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQ 476 Query: 487 HAEARKRTLLRYAVVKK 503 H ARK+TL RYAVVKK Sbjct: 477 HDVARKQTLARYAVVKK 493