BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0096.p (311 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SVA6.1 A6SVA6_JANMA Transcriptional regulator, LysR family 599 e-169 D8J1V5.1 D8J1V5_HERSS Transcription regulator protein 593 e-167 F1VXF8.1 F1VXF8_9BURK Transcriptional regulator, LysR family (Fr... 484 e-135 B5WL11.1 B5WL11_9BURK Transcriptional regulator, LysR family 291 7e-77 B2JI81.1 B2JI81_BURP8 Transcriptional regulator, LysR family 291 8e-77 >A6SVA6.1 A6SVA6_JANMA Transcriptional regulator, LysR family Length = 311 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/311 (92%), Positives = 300/311 (96%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLN+PQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESL+K AKRILDE E LF+PKTAFVPQ+EARTFHIAAPDYMNT FFTEVIAR Sbjct: 61 GMVPTQHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 LRRESPKSHIVIHALGP+TDYVRLLSDGELDLVIANWDE P HLH+SKLFDDPIVCLMRS Sbjct: 121 LRRESPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRS 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 DCAYAKRTAKDAMTIEDYL+LPHAAPSQILPGYHGTIDTFLEKQNL RN+VVESAHFRML Sbjct: 181 DCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRML 240 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMV +TDLVL+AGQQF SFYEKTLSLKSY+VPIKFPPLRFYQLWHERVHQATEHKWLRA Sbjct: 241 PYMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 Query: 301 QVSAAAKMLVN 311 QV AAAK+L + Sbjct: 301 QVCAAAKVLSD 311 >D8J1V5.1 D8J1V5_HERSS Transcription regulator protein Length = 314 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/311 (90%), Positives = 298/311 (95%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLD+HLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDLHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESLLKPAKRILDETERLF+PKT FVPQEE R FHIAAPDYMNTPFFTEVIAR Sbjct: 61 GMVPTQHGESLLKPAKRILDETERLFIPKTEFVPQEEERIFHIAAPDYMNTPFFTEVIAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 LRRESP+S IVIHALGP+TDYVR LSDGELDLVIANWD PP HLHLSKLFDDPIVCLMR+ Sbjct: 121 LRRESPRSRIVIHALGPDTDYVRRLSDGELDLVIANWDAPPAHLHLSKLFDDPIVCLMRA 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 DCAYA+RTA++AM++EDYL+LPHAAPSQILPGYHG+ID+FLEKQNL RNVVVESAHFRML Sbjct: 181 DCAYARRTAREAMSVEDYLSLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRML 240 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMVAQTDLVL+AGQQFASFYEK LSLKSY+VPIKFPPLRFYQLWHER HQATEHKWLRA Sbjct: 241 PYMVAQTDLVLTAGQQFASFYEKLLSLKSYAVPIKFPPLRFYQLWHERSHQATEHKWLRA 300 Query: 301 QVSAAAKMLVN 311 QV AAAK+L Sbjct: 301 QVGAAAKLLAQ 311 >F1VXF8.1 F1VXF8_9BURK Transcriptional regulator, LysR family (Fragment) Length = 315 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 227/307 (73%), Positives = 260/307 (84%) Query: 4 LPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 63 LPDHLDIHLIRILY+LL EK+VSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV Sbjct: 9 LPDHLDIHLIRILYMLLSEKSVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 68 Query: 64 PTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRR 123 PTQHGESLLKPAKRIL ETERLFV K FV Q+E RTFHIAAPDY+ + F V++ LRR Sbjct: 69 PTQHGESLLKPAKRILVETERLFVRKVPFVAQDEGRTFHIAAPDYLASQFLPNVVSSLRR 128 Query: 124 ESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRSDCA 183 ESPKS +VIH LGPE DY+RLLSDG+LDLVIANW EPP HLHLSKLF+D I C M S+CA Sbjct: 129 ESPKSKLVIHGLGPEIDYIRLLSDGDLDLVIANWGEPPAHLHLSKLFEDTIACFMHSECA 188 Query: 184 YAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRMLPYM 243 YAKRT D MT+EDYL+LPH AP+Q L GY+G I+ +L KQN+ RNV V+SA F ++PYM Sbjct: 189 YAKRTGPDDMTVEDYLSLPHVAPAQTLAGYNGVIEGYLAKQNMKRNVTVQSAFFGLIPYM 248 Query: 244 VAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRAQVS 303 + QTDLVL+ G+QF FYEKTL LK ++VP+KFP +R+YQLWH+RVHQ+ EHKWLR +S Sbjct: 249 LTQTDLVLTTGEQFLRFYEKTLPLKRFTVPVKFPKMRYYQLWHDRVHQSNEHKWLRDLIS 308 Query: 304 AAAKMLV 310 AAAK L Sbjct: 309 AAAKSLT 315 >B5WL11.1 B5WL11_9BURK Transcriptional regulator, LysR family Length = 310 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 141/311 (45%), Positives = 202/311 (64%), Gaps = 3/311 (0%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MS+ + +D +L+R+L+ LL E++V+R A+KLNQ QP+ISA+LR+LR++TGDPLLVRG Sbjct: 1 MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKS 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPT++G LL+P + L E ER+ + F P R + I PDY+N F V+ R Sbjct: 61 GMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVER 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 R+ +P + + H+LGP DY L DG+LD+V+ NW EPP LHLS LF D IVCLM S Sbjct: 121 FRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDQIVCLMSS 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 +AKR +T++ YL PH AP+ G G ID L ++ L R+VVV +F + Sbjct: 181 THPFAKR---GGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLA 237 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PY++ ++DL+ + + FA +Y K L L P+ FPP+++YQLWHERVH + E +WLR Sbjct: 238 PYVLIKSDLIFTTTRLFADYYAKFLPLTVVPAPLDFPPMQYYQLWHERVHYSDEVRWLRG 297 Query: 301 QVSAAAKMLVN 311 V+ A + L++ Sbjct: 298 LVAEATRTLID 308 >B2JI81.1 B2JI81_BURP8 Transcriptional regulator, LysR family Length = 309 Score = 291 bits (745), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 141/311 (45%), Positives = 203/311 (65%), Gaps = 3/311 (0%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MS+ + +D +L+R+L+ LL E++V+R A+KLNQ QP+ISA+LR+LR++TGDPLLVRG Sbjct: 1 MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKS 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPT++G LL+P + L E ER+ + F P R + I PDY+N F V+ R Sbjct: 61 GMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVER 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 R+ +P + + H+LGP DY L DG+LD+V+ NW EPP LHLS LF D IVCLM + Sbjct: 121 FRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDQIVCLMSN 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 +AKR +T++ YL PH AP+ G G ID L ++ L R+VVV +F + Sbjct: 181 THPFAKR---GGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLA 237 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PY++ ++DL+ + + FA +Y K L L P+ FPP+++YQLWHERVH + E +WLR+ Sbjct: 238 PYVLIKSDLIFTTTRLFADYYAKFLPLTVVPAPLDFPPMQYYQLWHERVHYSDEVRWLRS 297 Query: 301 QVSAAAKMLVN 311 V+ A K L++ Sbjct: 298 LVAEATKTLID 308