BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0027.p         (178 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J0G4.1 D8J0G4_HERSS Methyl-accepting chemotaxis transducer tra...   163   9e-39
Q21WA5.1 Q21WA5_RHOFD Methyl-accepting chemotaxis sensory transd...   156   9e-37
C5TCI4.1 C5TCI4_ACIDE Methyl-accepting chemotaxis sensory transd...   154   4e-36
A1TIP7.1 A1TIP7_ACIAC Methyl-accepting chemotaxis sensory transd...   146   1e-33
Q0JZV9.1 Q0JZV9_CUPNH Methyl-accepting chemotaxis protein             145   2e-33

>D8J0G4.1 D8J0G4_HERSS Methyl-accepting chemotaxis transducer transmembrane
           protein
          Length = 536

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%)

Query: 1   MNVIGNMKIGKRLGLGFAIILALSVLIAVIGVWRLQSVAKATQAMMDVPLAKERMIGDWY 60
           MN+IGNM IG+RL LGFA+IL  S++IA IG+WRL  VA+AT+ MM  PL  ER++ DWY
Sbjct: 1   MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60

Query: 61  RHTYSGIRRATAVAKSSDPSLSAFFKPETDEATRISTELQKKILELLVSDEEKQLYEKIM 120
            +  +GIRR  A+AKSSDP+L  +F  E   +++ S E QK++  LL + EEK L++KI 
Sbjct: 61  TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120

Query: 121 SLRKVYLAKRDVIYKAKGEPNPDPAMIADALEKDYLPAAKNYSTEVENLL 170
            LRK+YL+ RD I KAK   N + AM    L++ ++P A  Y   +  L+
Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAM--RILDQVFVPNATAYQDTMRKLV 168


>Q21WA5.1 Q21WA5_RHOFD Methyl-accepting chemotaxis sensory transducer
          Length = 583

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 106/172 (61%), Gaps = 2/172 (1%)

Query: 1   MNVIGNMKIGKRLGLGFAIILALSVLIAVIGVWRLQSVAKATQAMMDVPLAKERMIGDWY 60
           M +  +MKIGKRLG GFA++LA +VLI  IGVW+L ++  AT+ M   PLAKER+I DW 
Sbjct: 1   MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPLAKERLISDWS 60

Query: 61  RHTYSGIRRATAVAKSSDPSLSAFFKPETDEATRISTELQKKILELLVSDEEKQLYEKIM 120
           R+    + R TAVAKSSDPSL  FF     E T+ ++ L K+I  LL S EEK L+ K+ 
Sbjct: 61  RNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALLKQIEPLLSSQEEKDLFSKVS 120

Query: 121 SLRKVYLAKRDVIYKAKGEPNPDPAMIADALEKDYLPAAKNYSTEVENLLAL 172
            +RK YL+ RD + K K +   D A     LE  Y+PAA NY   V   L L
Sbjct: 121 DVRKAYLSSRDQVTKLKADGQADEAN--RLLESTYIPAADNYMKLVSEFLGL 170


>C5TCI4.1 C5TCI4_ACIDE Methyl-accepting chemotaxis sensory transducer
           (Fragment)
          Length = 527

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 108/167 (64%), Gaps = 2/167 (1%)

Query: 6   NMKIGKRLGLGFAIILALSVLIAVIGVWRLQSVAKATQAMMDVPLAKERMIGDWYRHTYS 65
           N+KIG RLG GFA++LAL VL+ + G+WRLQ+VA+AT  M   PLA ERMI DWYR+ YS
Sbjct: 3   NLKIGTRLGGGFALVLALMVLMTLFGLWRLQTVAQATNDMTQQPLAMERMISDWYRYVYS 62

Query: 66  GIRRATAVAKSSDPSLSAFFKPETDEATRISTELQKKILELLVSDEEKQLYEKIMSLRKV 125
           G RR TA+ KS+DPSL+ FF  +   +TR S +LQ +I  LL +  EK+L+  I   R  
Sbjct: 63  GARRTTAIVKSTDPSLAGFFAEDAAMSTRESGKLQDRIEPLLSNPAEKELWVTIKKARVT 122

Query: 126 YLAKRDVIYKAKGEPNPDPAMIADALEKDYLPAAKNYSTEVENLLAL 172
           YL+ RD   KAK +   + A     L + YLPAA+ Y   ++ LL L
Sbjct: 123 YLSSRDQAVKAKADGQLEEA--ERTLTQVYLPAAEKYMALIQQLLDL 167


>A1TIP7.1 A1TIP7_ACIAC Methyl-accepting chemotaxis sensory transducer
          Length = 592

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 100/167 (59%), Gaps = 2/167 (1%)

Query: 6   NMKIGKRLGLGFAIILALSVLIAVIGVWRLQSVAKATQAMMDVPLAKERMIGDWYRHTYS 65
           N+ IG RL  GFA++L L  L+ V G+WRL SVA+AT  M   PLA ERMI DWYR+  S
Sbjct: 3   NLSIGTRLAGGFALVLGLMALMTVFGLWRLHSVAQATHDMTQQPLANERMISDWYRYVDS 62

Query: 66  GIRRATAVAKSSDPSLSAFFKPETDEATRISTELQKKILELLVSDEEKQLYEKIMSLRKV 125
             RR TA+ KSSDPSL+AFF  ++   TR S +L +KI   L S EEK ++  I   R  
Sbjct: 63  AARRTTAIVKSSDPSLAAFFAEDSAMTTRESAQLVEKIEPQLDSTEEKAVWADIAKARSA 122

Query: 126 YLAKRDVIYKAKGEPNPDPAMIADALEKDYLPAAKNYSTEVENLLAL 172
           YLA RD   KAK E   + A     L + YLPA K Y   ++ LL L
Sbjct: 123 YLASRDQAVKAKAEGRTEEA--ERLLTQVYLPATKAYVALIQQLLDL 167


>Q0JZV9.1 Q0JZV9_CUPNH Methyl-accepting chemotaxis protein
          Length = 513

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 6   NMKIGKRLGLGFAIILALSVLIAVIGVWRLQSVAKATQAMMDVPLAKERMIGDWYRHTYS 65
           N+ IG RLG+GF ++L LS L+ V G+ RLQ VA+ T AMM  PL KER++ DWYR  ++
Sbjct: 3   NLGIGVRLGIGFGVVLLLSALMTVFGMMRLQQVAERTHAMMQQPLTKERLVSDWYRLMHT 62

Query: 66  GIRRATAVAKSSDPSLSAFFKPETDEATRISTELQKKILELLVSDEEKQLYEKIMSLRKV 125
            +RR TAVA+S+DPSL AFF  ET  +      L+ K+  +L S EEK  ++KI+S+R  
Sbjct: 63  SVRRTTAVARSADPSLGAFFAAETKASIEGIAALRDKLQPMLSSAEEKAAFQKILSVRDP 122

Query: 126 YLAKRDVIYKAKGEPNPDPAMIADALEKDYLPAAKNYSTEVENLL 170
           Y   RD I K K E   + A     LEK+++PA   Y  E++ LL
Sbjct: 123 YNNGRDKITKLKQEGLTEEAN--QVLEKEFVPAGDAYLGEIQKLL 165