BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0011.p (291 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1WPX3.1 A1WPX3_VEREI Nitrate ABC transporter, inner membrane su... 517 e-145 Q12GT6.1 Q12GT6_POLSJ Nitrate transport permease 417 e-115 A2SLK0.1 A2SLK0_METPP Nitrate ABC transporter permease protein 405 e-111 A4SXJ8.1 A4SXJ8_POLSQ Nitrate ABC transporter, inner membrane su... 398 e-109 C9YCL8.1 C9YCL8_9BURK Nitrate transport permease protein nrtB 397 e-108 >A1WPX3.1 A1WPX3_VEREI Nitrate ABC transporter, inner membrane subunit Length = 295 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 264/295 (89%), Positives = 276/295 (93%), Gaps = 4/295 (1%) Query: 1 MKPAAQPGWRAAMISLALFGCLLLVWHLATAPKQSVEQARAAATSSA----DDEYAKLMG 56 M PAAQ GWR +ISL +FGCLLLVWHLATAP QSV A A A S+A +DEYAKLMG Sbjct: 1 MTPAAQLGWRTGLISLVIFGCLLLVWHLATAPGQSVASAGAGAASAATSAAEDEYAKLMG 60 Query: 57 KSSSSPVKTSGFPGLAQMGETMRRELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAAL 116 K SSSPVKTSGFPGLAQMG+T+R+ELA+PFYDNGPNDKGIGIQLGYSLARVGLGFAIAA+ Sbjct: 61 KGSSSPVKTSGFPGLAQMGQTIRKELAHPFYDNGPNDKGIGIQLGYSLARVGLGFAIAAV 120 Query: 117 VAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWP 176 VAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWP Sbjct: 121 VAIPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWP 180 Query: 177 MLMNTAFGVASVRRDWLNVAKTLEVTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVA 236 MLMNTAFGVASVRRDWLN AKTLEV PLRKAFLVILPAAAPTILTGMRISMGIAWLVIVA Sbjct: 181 MLMNTAFGVASVRRDWLNAAKTLEVKPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVA 240 Query: 237 AEMLVGGTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVLDLFFARLQKLVTYTE 291 AEMLVGGTGIGY+VWNEWNNLSLTSVIFAIL+IGVTGM+LDL FARLQKLVTYTE Sbjct: 241 AEMLVGGTGIGYYVWNEWNNLSLTSVIFAILLIGVTGMLLDLVFARLQKLVTYTE 295 >Q12GT6.1 Q12GT6_POLSJ Nitrate transport permease Length = 287 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/282 (72%), Positives = 239/282 (84%), Gaps = 1/282 (0%) Query: 10 RAAMISLALFGCLLLVWHLATAPKQSVEQARAAATSSADDEYAKLMGKSSSSPVKTSGFP 69 +A ++SL +F L +W+ AT P A A S+ EY K+MGK S KT+GFP Sbjct: 7 KAGLVSLLIFLAFLGIWYTATLPSPGTPVASTAGLSAEQIEYQKMMGKDPGS-TKTTGFP 65 Query: 70 GLAQMGETMRRELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLGFLLGMSP 129 L QMG + ++++NP YDNGPNDKGI IQLG+SLARVGLGF +A VA+PLGF++GMSP Sbjct: 66 TLGQMGAAIWKQVSNPLYDNGPNDKGILIQLGHSLARVGLGFLLACAVAVPLGFVIGMSP 125 Query: 130 LMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTAFGVASVR 189 L++RA +PFIQ+LKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPML+NTAFGV++V+ Sbjct: 126 LLRRAFDPFIQVLKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLINTAFGVSAVK 185 Query: 190 RDWLNVAKTLEVTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYF 249 R+WLNVA TLEV+PLRKAFLVILPAAAPTI TGMRISMGIAWLVIVAAEMLVGGTGIGYF Sbjct: 186 REWLNVASTLEVSPLRKAFLVILPAAAPTIFTGMRISMGIAWLVIVAAEMLVGGTGIGYF 245 Query: 250 VWNEWNNLSLTSVIFAILVIGVTGMVLDLFFARLQKLVTYTE 291 VWNEWNNLSLT+VIFAILVIG+ GM+LDL FA+LQK+VTY E Sbjct: 246 VWNEWNNLSLTNVIFAILVIGIVGMLLDLSFAQLQKMVTYVE 287 >A2SLK0.1 A2SLK0_METPP Nitrate ABC transporter permease protein Length = 295 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/271 (77%), Positives = 228/271 (84%), Gaps = 4/271 (1%) Query: 25 VWHLATAPKQSVEQARAAATSSADDEYAKLMGKS----SSSPVKTSGFPGLAQMGETMRR 80 VW LAT P A AA + EYA+L+GK + S SGFP AQ+G M Sbjct: 25 VWQLATRPAAGSAAAPAATMTPEQIEYARLLGKEPGAEAGSTAGRSGFPTPAQLGSKMVE 84 Query: 81 ELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQ 140 L+ PFYDNGPNDKGIG+QL YSL RVGLGFA+AALVAIPLGFL+GMSPL+ RAL+PFIQ Sbjct: 85 HLSRPFYDNGPNDKGIGLQLAYSLGRVGLGFALAALVAIPLGFLIGMSPLVYRALDPFIQ 144 Query: 141 ILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLE 200 +LKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPML+NTAFGVA VRR+WLNVA+TLE Sbjct: 145 VLKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLINTAFGVAGVRREWLNVARTLE 204 Query: 201 VTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT 260 V+PLRKAF VILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT Sbjct: 205 VSPLRKAFEVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT 264 Query: 261 SVIFAILVIGVTGMVLDLFFARLQKLVTYTE 291 +VIFAILVIGV GM+LDL FAR QK VTY + Sbjct: 265 NVIFAILVIGVVGMLLDLLFARAQKAVTYVD 295 >A4SXJ8.1 A4SXJ8_POLSQ Nitrate ABC transporter, inner membrane subunit Length = 286 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/282 (70%), Positives = 236/282 (83%), Gaps = 4/282 (1%) Query: 10 RAAMISLALFGCLLLVWHLATAPKQSVEQARAAATSSADDEYAKLMGKSSSSPVKTSGFP 69 + A++S+ + L +WH+AT K + S++ EY+ LMG+ S PV+ +GFP Sbjct: 9 KGAILSVVILLMCLFIWHMATTQKVT----PPPGVSTSSSEYSSLMGQGGSDPVQKTGFP 64 Query: 70 GLAQMGETMRRELANPFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLGFLLGMSP 129 L QMGET+ ++L++PFYDNGPNDKGIGIQL YSLARV LGF +A +VAIP GF +GMSP Sbjct: 65 TLTQMGETIYKQLSHPFYDNGPNDKGIGIQLAYSLARVALGFLLAMIVAIPFGFWIGMSP 124 Query: 130 LMQRALNPFIQILKPISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTAFGVASVR 189 L A NPFIQILKPISPLAWMP+ALYTIKDS+ISGIFVIFICSVWPML+NTAFGVA+VR Sbjct: 125 LAYEAFNPFIQILKPISPLAWMPIALYTIKDSAISGIFVIFICSVWPMLLNTAFGVANVR 184 Query: 190 RDWLNVAKTLEVTPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYF 249 ++ LNVAKTLEV+PLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYF Sbjct: 185 KELLNVAKTLEVSPLRKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYF 244 Query: 250 VWNEWNNLSLTSVIFAILVIGVTGMVLDLFFARLQKLVTYTE 291 +WNEWNNLSL+SVIFAIL+IG+ GM+LD F +LQK V+Y + Sbjct: 245 LWNEWNNLSLSSVIFAILLIGIVGMLLDTAFGKLQKAVSYAD 286 >C9YCL8.1 C9YCL8_9BURK Nitrate transport permease protein nrtB Length = 287 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/267 (74%), Positives = 226/267 (84%), Gaps = 4/267 (1%) Query: 25 VWHLATAPKQSVEQARAAATSSADDEYAKLMGKSSSSPVKTSGFPGLAQMGETMRRELAN 84 +W +AT S A A+ S+ EY K++GK + K GFP QMG T+ + LA+ Sbjct: 25 IWQVAT---HSSGAASASNLSAEQIEYLKMLGKDPGTQ-KQGGFPTPVQMGSTIWKHLAD 80 Query: 85 PFYDNGPNDKGIGIQLGYSLARVGLGFAIAALVAIPLGFLLGMSPLMQRALNPFIQILKP 144 PFYD GPNDKGI IQLG+SLARVGLGF +A +VAIPLGF++GMSPL+ +AL+PFIQILKP Sbjct: 81 PFYDKGPNDKGIAIQLGHSLARVGLGFLLACVVAIPLGFVIGMSPLLHKALDPFIQILKP 140 Query: 145 ISPLAWMPLALYTIKDSSISGIFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVTPL 204 ISPLAWMPLALYTIKDSS SGIFVIFICSVWPML+NTAFGVASV+R+WLNVA+TLEV PL Sbjct: 141 ISPLAWMPLALYTIKDSSASGIFVIFICSVWPMLINTAFGVASVKREWLNVARTLEVKPL 200 Query: 205 RKAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIF 264 RKAF VILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLT+V+F Sbjct: 201 RKAFQVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTNVLF 260 Query: 265 AILVIGVTGMVLDLFFARLQKLVTYTE 291 AI VIGV GM+LDL FARLQK VTY + Sbjct: 261 AIGVIGVMGMLLDLVFARLQKWVTYAD 287