BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0007.p (430 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A2SLK9.1 A2SLK9_METPP Signal transduction histidine kinase-like ... 439 e-121 C9YCL4.1 C9YCL4_9BURK Putative uncharacterized protein 430 e-118 Q12GT3.1 Q12GT3_POLSJ PAS/PAC sensor signal transduction histidi... 419 e-115 Q21S09.1 Q21S09_RHOFD PAS/PAC sensor signal transduction histidi... 405 e-111 E5U625.1 E5U625_ALCXX PAS/PAC sensor signal transduction histidi... 295 1e-77 >A2SLK9.1 A2SLK9_METPP Signal transduction histidine kinase-like protein Length = 410 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 233/413 (56%), Positives = 285/413 (69%), Gaps = 43/413 (10%) Query: 24 DATLLRDKLTLLLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAAGAEMLGYRI 83 D T +D+LTLLL+STG+GI+GID+DG CTF+ A A+ LGYR Sbjct: 25 DGTPWQDRLTLLLESTGDGIFGIDIDGCCTFMN----------------RAAAQGLGYRT 68 Query: 84 EQMLGKNMHELVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADGTCFATEYSS 143 E++LG+NMH L+HHSH +G HY E DCPI AFR+G CR+D EV WRAD + F EYSS Sbjct: 69 EEVLGRNMHALIHHSHGNGAHYAEADCPIFNAFRRGLPCRIDHEVLWRADDSSFQAEYSS 128 Query: 144 YQIIDGGRVRGAVITFSDISKRRLAEEQLQRAKAELE-------QRVAERTRELSAALMQ 196 Y I++ G V GAV+TF DI+ R+ AEEQL RAK ELE QRVAERTR LS AL Q Sbjct: 129 YPIVEAGAVVGAVVTFVDITARKQAEEQLVRAKRELERTNDRLEQRVAERTRALSDALAQ 188 Query: 197 VRELSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVADREPVARKCASMNR 256 R LSA+ +VRE+ERTRIAREIHDELGSLLVALK+DVNW+ RVADR P+A KC M Sbjct: 189 RRRLSAYLETVREEERTRIAREIHDELGSLLVALKMDVNWLEKRVADRLPLAAKCEGMGA 248 Query: 257 LIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAPQG 316 LI+ AVD VGRIITDLRPSILDHQGL AALEWQ QE+ E+ EL D++ ++ P+G Sbjct: 249 LIDTAVDKVGRIITDLRPSILDHQGLWAALEWQAQEWLESAELEADIQVHVAAGVAPPEG 308 Query: 317 TLATAAFRIFQEMLSNVAQHSQATQV--KIVVRLTPDALL-MEVEDNGVGVPAAALANPK 373 A A FRIFQE+LSN+A+H++A +V +IVV P+ +L ++V D+GVG A AL +P+ Sbjct: 309 GSAIAVFRIFQELLSNIARHAKARRVGIRIVVDAPPEPVLYLDVRDDGVGTTAEALNDPR 368 Query: 374 SYGVMGMRERALHFAGALNIENAVDGAKEAGVAPESGKSIRNPGTRVRLVLPL 426 SYGVMGMRERA HF G L I++A GT VRLV+PL Sbjct: 369 SYGVMGMRERAAHFGGRLTIDSAP-----------------GQGTLVRLVMPL 404 >C9YCL4.1 C9YCL4_9BURK Putative uncharacterized protein Length = 400 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/383 (56%), Positives = 265/383 (69%), Gaps = 29/383 (7%) Query: 27 LLRDKLTLLLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAAGAEMLGYRIEQM 86 L RD+L+LLL+STGEGI+GID++GRCTFI AGA MLGY ++ Sbjct: 20 LWRDRLSLLLESTGEGIFGIDMNGRCTFIN----------------RAGAAMLGYESHEV 63 Query: 87 LGKNMHELVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADGTCFATEYSSYQI 146 LG NMHEL HHSH GEHYPE CPI AFRK CR+D E+FWR DG+ FA EYSS+ I Sbjct: 64 LGANMHELAHHSHPGGEHYPEHTCPIFNAFRKALPCRIDTELFWRRDGSAFAVEYSSHPI 123 Query: 147 IDGGRVRGAVITFSDISKRRLAEEQLQRAKAELEQRVAERTRELSAALMQVRELSAHAHS 206 +D G V+GAV+TF DIS RR AEE L+RA ELEQRV ERT+ LS AL Q+REL+A++HS Sbjct: 124 VDSGLVQGAVVTFVDISARRNAEEALRRAHTELEQRVEERTQALSEALQQLRELTAYSHS 183 Query: 207 VREDERTRIAREIHDELGSLLVALKLDVNWMAGRVAD------------REPVARKCASM 254 VRE+ERTRIARE+HDELGSLLVALK+DV W+ R+ + R+ + KC +M Sbjct: 184 VREEERTRIAREVHDELGSLLVALKMDVGWLEKRLGEQPGRAPDAAQAMRDQMQHKCRNM 243 Query: 255 NRLIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAP 314 ++LIEAAVDNVGRIITDLRPSILDHQGL AL+WQ EF ++ E+ D D+S P Sbjct: 244 SQLIEAAVDNVGRIITDLRPSILDHQGLWVALDWQAHEFVQSAEMGLDWHMDVSAAQPVP 303 Query: 315 QGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKS 374 T A FRIFQEMLSNV +H+QAT + I +R + + V+DNG G P A P + Sbjct: 304 D-THTIAIFRIFQEMLSNVGRHAQATHLDISIRADASDITISVKDNGRGAPMQAFDAPDA 362 Query: 375 YGVMGMRERALHFAGALNIENAV 397 YG+MGMRERA H G+L I + + Sbjct: 363 YGIMGMRERARHLGGSLEIASQI 385 >Q12GT3.1 Q12GT3_POLSJ PAS/PAC sensor signal transduction histidine kinase EC=2.7.13.3 Length = 410 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/384 (56%), Positives = 267/384 (69%), Gaps = 29/384 (7%) Query: 26 TLLRDKLTLLLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAAGAEMLGYRIEQ 85 + RDKL+ LL+STGEGI+GID+DGRCTFI AGAE LG+ + Sbjct: 29 VVWRDKLSQLLESTGEGIFGIDMDGRCTFIN----------------RAGAEQLGWLPAE 72 Query: 86 MLGKNMHELVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADGTCFATEYSSYQ 145 +LG NMHEL HHSH G HYPE CPI AFRK CR+D E+FWR +G+ FA EYSSY Sbjct: 73 VLGHNMHELAHHSHAGGAHYPEHLCPIFNAFRKALPCRIDTELFWRKNGSAFAVEYSSYP 132 Query: 146 IIDGGRVRGAVITFSDISKRRLAEEQLQRAKAELEQRVAERTRELSAALMQVRELSAHAH 205 I++GG V+GAV+TF DIS RR AE+ L++A A LEQRV+ERT+ LS AL Q+REL+A+ H Sbjct: 133 IVEGGVVQGAVVTFVDISARRQAEDALRQAHAVLEQRVSERTQALSEALEQLRELTAYTH 192 Query: 206 SVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVAD------------REPVARKCAS 253 SVREDERTRIARE+HDELGSLLVALK+DV W+ R+ + RE + KC + Sbjct: 193 SVREDERTRIAREVHDELGSLLVALKMDVGWLDKRLGEQQQRSLDEAQSMRERMRSKCQN 252 Query: 254 MNRLIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFA 313 M RLIEAAVDNVGRIITDLRPSILDHQGL AAL+WQ EF + EL D + D++ A Sbjct: 253 MGRLIEAAVDNVGRIITDLRPSILDHQGLWAALDWQAHEFVLSAELALDWQMDVAGAAPL 312 Query: 314 PQGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPK 373 P+ A FRIFQEMLSNV +H+QA++V I ++ TP + + V DNG G AAA Sbjct: 313 PEQA-AIGIFRIFQEMLSNVGRHAQASRVAITIQATPRDISIAVRDNGKGAEAAAFEAAN 371 Query: 374 SYGVMGMRERALHFAGALNIENAV 397 +YGVMGMRERA H G L+I + + Sbjct: 372 AYGVMGMRERARHLGGTLDISSQI 395 >Q21S09.1 Q21S09_RHOFD PAS/PAC sensor signal transduction histidine kinase EC=2.7.3.- Length = 412 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/383 (55%), Positives = 262/383 (68%), Gaps = 29/383 (7%) Query: 27 LLRDKLTLLLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAAGAEMLGYRIEQM 86 +L+ +L LLL+STGEGIYGID++GRCTFI AGA M+G E++ Sbjct: 32 VLQKQLALLLESTGEGIYGIDMEGRCTFIN----------------RAGANMIGREPEEV 75 Query: 87 LGKNMHELVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADGTCFATEYSSYQI 146 LG NMHEL HHSH G+ Y DC I AFR+G CR+D EVFW D CF EYSSY + Sbjct: 76 LGCNMHELTHHSHPGGQPYAAHDCAIFNAFRQGLPCRIDTEVFWHRDQHCFPVEYSSYPL 135 Query: 147 IDGGRVRGAVITFSDISKRRLAEEQLQRAKAELEQRVAERTRELSAALMQVRELSAHAHS 206 +DG V GAVITF DI++R+ A + LQ AK ELEQRV+ERT+ELS AL Q+RELSA++ + Sbjct: 136 MDGDTVLGAVITFVDITERKRAADALQLAKNELEQRVSERTQELSVALGQLRELSAYSEN 195 Query: 207 VREDERTRIAREIHDELGSLLVALKLDVNWMAGRVAD------------REPVARKCASM 254 VREDERTRIARE+HDELGSLLVALK+DVNWM R+++ R + KC +M Sbjct: 196 VREDERTRIAREVHDELGSLLVALKMDVNWMDKRLSEQQQRTPHEAEAMRTRLRSKCRNM 255 Query: 255 NRLIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAP 314 + LIE AVDNVGRIITDLRPSILDHQGL AALEWQ EF+++ EL D + + P Sbjct: 256 SGLIERAVDNVGRIITDLRPSILDHQGLWAALEWQAHEFAQSAELALDWDMQGTDGVELP 315 Query: 315 QGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKS 374 + A A FRIFQEMLSNVA+H+QA + + +++ + L + V+DNG G A A P + Sbjct: 316 EPE-AMAVFRIFQEMLSNVARHAQAMALTLRIQVEAEVLTISVQDNGCGANALAFEAPTA 374 Query: 375 YGVMGMRERALHFAGALNIENAV 397 YGVMGMRERA HF G L I + + Sbjct: 375 YGVMGMRERARHFGGQLEISSQI 397 >E5U625.1 E5U625_ALCXX PAS/PAC sensor signal transduction histidine kinase Length = 380 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 164/382 (42%), Positives = 226/382 (59%), Gaps = 18/382 (4%) Query: 15 MDSALRGSSDATLLRDKLTLLLDSTGEGIYGIDLDGRCTFIKGGGGGGEMLGYRIEXLAA 74 M + L+ S R +L +LL+S GEGIYGIDL GRC FI G A Sbjct: 1 MFADLKHLSHHAAWRRQLEMLLESAGEGIYGIDLRGRCIFING----------------A 44 Query: 75 GAEMLGYRIEQMLGKNMHELVHHSHEHGEHYPEEDCPILKAFRKGESCRVDQEVFWRADG 134 GA MLGY ++++G+NMH L+HHSH P DC I KAFR G RVD EV WR DG Sbjct: 45 GAAMLGYTPDEVVGRNMHYLIHHSHADRSLMPVHDCRIFKAFRDGRGERVDDEVLWRRDG 104 Query: 135 TCFATEYSSYQIIDGGRVRGAVITFSDISKRRLAEEQLQRAKAELEQRVAERTRELSAAL 194 +CF +Y+SY I + V GAV+TFSDIS R+ E +LQ +A+LE RV RT ELSAA Sbjct: 105 SCFDAQYASYPIRNDQEVVGAVVTFSDISARKRIERELQGTRAQLEARVQVRTAELSAAH 164 Query: 195 MQVRELSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAGRVADREPVARKCASM 254 +R L++H ++RE ER IAR IHD+LG+ AL+LD+NW+ ++A P+ M Sbjct: 165 ESLRRLASHLSTLREQERAHIARNIHDDLGASFTALQLDLNWLRRQLAGEPPLQAHLDRM 224 Query: 255 NRLIEAAVDNVGRIITDLRPSILDHQGLVAALEWQVQEFSEATELPCDVEFDISPQAFAP 314 + + A+D RI+ DLRP +LDH GL AALE +Q+ + L C ++ Sbjct: 225 LEVTQTAMDATRRILNDLRPVVLDHLGLWAALETLLQDLQARSGLRCRYLCPPDTESRRL 284 Query: 315 QGTLATAAFRIFQEMLSNVAQHSQATQVKIVVRLTPDALLMEVEDNGVGVPAAALANPKS 374 + A +RI QE+L+NV +H++A V + D LL+EVED+GVG+ ++ Sbjct: 285 EPAAEIAVYRIVQELLTNVQRHARARSVSVSAVWGEDGLLLEVEDDGVGMRLP--ETRQT 342 Query: 375 YGVMGMRERALHFAGALNIENA 396 +G++GMRERA G L +++A Sbjct: 343 FGILGMRERARAIGGDLELDSA 364