BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0030.p (264 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0B8.1 D8J0B8_HERSS Flagellar motor component protein 503 e-140 A6SZU2.1 A6SZU2_JANMA MotA chemotaxis protein 459 e-127 F1VZI1.1 F1VZI1_9BURK Flagellar motor rotation protein MotA 457 e-127 A4G4N3.2 A4G4N3_HERAR Chemotaxis protein MotA (Motility protein A) 451 e-125 Q3SJG5.1 Q3SJG5_THIDA Probable chemotaxis transmembrane protein ... 430 e-119 >D8J0B8.1 D8J0B8_HERSS Flagellar motor component protein Length = 286 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 254/276 (92%), Positives = 258/276 (93%), Gaps = 12/276 (4%) Query: 1 MLSVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTY 60 M SVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNN KAIKATL+ALPTVFKGS Y Sbjct: 11 MASVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKALPTVFKGSAY 70 Query: 61 TKALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 120 TKALYMELM+LLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL Sbjct: 71 TKALYMELMALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 130 Query: 121 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMES 168 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL V VVHTMES Sbjct: 131 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVVHTMES 190 Query: 169 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 228 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN Sbjct: 191 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 250 Query: 229 GYAPALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264 GYAPALSIEFGRKVLFSTERP+FLELEEHVKQA+ K Sbjct: 251 GYAPALSIEFGRKVLFSTERPTFLELEEHVKQARGK 286 >A6SZU2.1 A6SZU2_JANMA MotA chemotaxis protein Length = 286 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/276 (81%), Positives = 248/276 (89%), Gaps = 12/276 (4%) Query: 1 MLSVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTY 60 +LSVFGGFA+AGGHL ALFQP+ELLMIGGAA GAF VGNN KAIKATL+ALP+VFKGS Y Sbjct: 11 VLSVFGGFALAGGHLAALFQPLELLMIGGAAVGAFFVGNNGKAIKATLKALPSVFKGSRY 70 Query: 61 TKALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 120 TK+LYMELM+LLFEILTK RKEGLMSIEGDIE PE S IF+KYP VLADHH IEFMTDYL Sbjct: 71 TKSLYMELMTLLFEILTKVRKEGLMSIEGDIEAPEESAIFAKYPTVLADHHTIEFMTDYL 130 Query: 121 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMES 168 RLMVSGNMDAFQIENLMDNEIETHH EGE+PVHC+AK+ V VVHTMES Sbjct: 131 RLMVSGNMDAFQIENLMDNEIETHHAEGEVPVHCVAKVGDGLPAFGIVAAVMGVVHTMES 190 Query: 169 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 228 VG+PP+ELGMLIAHALVGTFLGILL+YGFV PLSSLLEQKLHES+KI+QCVKVTLLASLN Sbjct: 191 VGLPPAELGMLIAHALVGTFLGILLSYGFVTPLSSLLEQKLHESSKIFQCVKVTLLASLN 250 Query: 229 GYAPALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264 GYAPAL++EFGRKVLFSTERPSF E+EEH++Q+KSK Sbjct: 251 GYAPALAVEFGRKVLFSTERPSFSEMEEHIRQSKSK 286 >F1VZI1.1 F1VZI1_9BURK Flagellar motor rotation protein MotA Length = 286 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/276 (81%), Positives = 249/276 (90%), Gaps = 12/276 (4%) Query: 1 MLSVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTY 60 MLSVFGGFAMAGGHL AL+QP+ELLMIGGAA GAFLVGNN KA+KATL+A+PT+FKGS + Sbjct: 11 MLSVFGGFAMAGGHLAALWQPLELLMIGGAALGAFLVGNNGKAMKATLQAVPTLFKGSKF 70 Query: 61 TKALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 120 TK+LYM+LMSL+FEILTK RKEGLMSIEGD+E+PE SPIFSKYP +L DHH++EF+TDYL Sbjct: 71 TKSLYMDLMSLMFEILTKVRKEGLMSIEGDVEKPEESPIFSKYPSILHDHHVVEFITDYL 130 Query: 121 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMES 168 RLMVSGNMDAFQIENLMDNEIETHHHEG +P HCIAKL V VVHTMES Sbjct: 131 RLMVSGNMDAFQIENLMDNEIETHHHEGAVPAHCIAKLGDGLPAFGIVAAVMGVVHTMES 190 Query: 169 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 228 V +PP+ELGMLIAHALVGTFLGILLAYGFVGPL+SLLEQKL ESTKIYQC+KVTLLASLN Sbjct: 191 VSLPPAELGMLIAHALVGTFLGILLAYGFVGPLASLLEQKLDESTKIYQCIKVTLLASLN 250 Query: 229 GYAPALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264 GYAPAL+IEFGRKVLFSTERP+F ELEEH+KQ+KSK Sbjct: 251 GYAPALAIEFGRKVLFSTERPTFGELEEHIKQSKSK 286 >A4G4N3.2 A4G4N3_HERAR Chemotaxis protein MotA (Motility protein A) Length = 286 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/274 (79%), Positives = 244/274 (89%), Gaps = 12/274 (4%) Query: 3 SVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTYTK 62 SVFGGFA+AGGHL +LFQP+ELLMIGGAA GAF VGNN+KAIKAT +ALP VFKGS YTK Sbjct: 13 SVFGGFALAGGHLSSLFQPVELLMIGGAAAGAFFVGNNSKAIKATFKALPNVFKGSKYTK 72 Query: 63 ALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYLRL 122 +LYMELM+LLFEILTK RKEGLMSIEGDI+ PE S IF+KYP VLADHH+IEF+TDYLRL Sbjct: 73 SLYMELMTLLFEILTKVRKEGLMSIEGDIDAPEESAIFTKYPTVLADHHIIEFITDYLRL 132 Query: 123 MVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMESVG 170 MVSGNMDAFQIENLMDNEI+THH EGEIPVHCIAK+ V VVHTM SVG Sbjct: 133 MVSGNMDAFQIENLMDNEIDTHHAEGEIPVHCIAKMGDGLPAFGIVAAVMGVVHTMASVG 192 Query: 171 IPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLNGY 230 +PP+ELG+LIA+ALVGTFLGILLAYGFV PLSS LEQKLHES+K++QC+KVTLLASLNGY Sbjct: 193 LPPAELGILIANALVGTFLGILLAYGFVSPLSSTLEQKLHESSKVFQCIKVTLLASLNGY 252 Query: 231 APALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264 APAL++EFGRKVLFSTERPSF ELE+H+KQ+KSK Sbjct: 253 APALAVEFGRKVLFSTERPSFSELEDHIKQSKSK 286 >Q3SJG5.1 Q3SJG5_THIDA Probable chemotaxis transmembrane protein MotA Length = 286 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/276 (74%), Positives = 241/276 (87%), Gaps = 12/276 (4%) Query: 1 MLSVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNTKAIKATLRALPTVFKGSTY 60 +LSVFGGF +AGGHL ALFQP+ELLMIGG A GAFLVGNN K IKATL+ALPTV KGS Y Sbjct: 11 VLSVFGGFVLAGGHLAALFQPLELLMIGGGAIGAFLVGNNNKVIKATLKALPTVLKGSKY 70 Query: 61 TKALYMELMSLLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYL 120 T+ALYM+ ++LL+E+LTK RKEGLMS+E D++ PESSP+FSKYP ++ADHH++EF+TDYL Sbjct: 71 TRALYMDTLALLYELLTKIRKEGLMSVEADVDSPESSPLFSKYPAIMADHHVVEFLTDYL 130 Query: 121 RLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKL------------VHXVVHTMES 168 RLMVSG+M+AF+IENLMDNEIETHHHEGE+P H IAK+ V VVHTMES Sbjct: 131 RLMVSGSMNAFEIENLMDNEIETHHHEGEVPAHVIAKIGDGLPAFGIVAAVMGVVHTMES 190 Query: 169 VGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLN 228 VG+PP+ELG+LIAHALVGTFLGILLAYGFVGPL+ LEQ++HESTK+ QCVKVTLLAS+N Sbjct: 191 VGLPPAELGILIAHALVGTFLGILLAYGFVGPLAGRLEQRVHESTKMLQCVKVTLLASIN 250 Query: 229 GYAPALSIEFGRKVLFSTERPSFLELEEHVKQAKSK 264 GYAPA+++EFGRKVLFSTERPSF ELE HVK AKS+ Sbjct: 251 GYAPAIAVEFGRKVLFSTERPSFSELEVHVKSAKSR 286