BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0013.p         (114 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SXT6.1 A6SXT6_JANMA Pseudouridine synthase EC=5.4.99.-              160   6e-38
A4G6D9.1 A4G6D9_HERAR Pseudouridine synthase EC=5.4.99.-              159   1e-37
F1VVL4.1 F1VVL4_9BURK Ribosomal large subunit pseudouridine synt...   148   2e-34
D8J0D5.1 D8J0D5_HERSS Pseudouridine synthase EC=5.4.99.-              140   6e-32
C3XB39.1 C3XB39_OXAFO Pseudouridine synthase EC=5.4.99.-              137   5e-31

>A6SXT6.1 A6SXT6_JANMA Pseudouridine synthase EC=5.4.99.-
          Length = 342

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 85/104 (81%)

Query: 1   MTAKPAVTHYRRAAVGALDGRAVSLMRCQLETGRTHQIRVHMQSLGFALVGDALYGKSHL 60
           +TAKPAVTH++R A G LDGR VSLM C+LETGRTHQIRVHMQS+GFALVGD LYGK HL
Sbjct: 236 LTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGDGLYGKQHL 295

Query: 61  MPFFPRQALQAWKLGLIHPATGKQVEWEVGLPEDFTELLERAGI 104
              FPRQAL A +LGLIHP +G+ VEW   LP+DF EL+ RAGI
Sbjct: 296 TTVFPRQALHARRLGLIHPVSGEAVEWSSELPQDFAELIARAGI 339


>A4G6D9.1 A4G6D9_HERAR Pseudouridine synthase EC=5.4.99.-
          Length = 318

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 85/104 (81%)

Query: 1   MTAKPAVTHYRRAAVGALDGRAVSLMRCQLETGRTHQIRVHMQSLGFALVGDALYGKSHL 60
           +TAKPA+TH++R A G LDGR VSLM CQLETGRTHQIRVHMQS+GFALVGDALYGK HL
Sbjct: 212 LTAKPALTHFQRLATGMLDGRPVSLMMCQLETGRTHQIRVHMQSIGFALVGDALYGKQHL 271

Query: 61  MPFFPRQALQAWKLGLIHPATGKQVEWEVGLPEDFTELLERAGI 104
              FPRQAL A +LGL+HP +G  VEW   LP+DF +L+ R+GI
Sbjct: 272 TTVFPRQALHARRLGLVHPVSGAAVEWSSELPQDFADLIARSGI 315


>F1VVL4.1 F1VVL4_9BURK Ribosomal large subunit pseudouridine synthase D
          Length = 355

 Score =  148 bits (374), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 81/104 (77%)

Query: 1   MTAKPAVTHYRRAAVGALDGRAVSLMRCQLETGRTHQIRVHMQSLGFALVGDALYGKSHL 60
           M+AKPA+TH+ R   G LD R VSLMRC+LETGRTHQIRVHMQS+GFALVGD LYGK HL
Sbjct: 236 MSAKPAITHFERIESGLLDRRPVSLMRCRLETGRTHQIRVHMQSIGFALVGDTLYGKQHL 295

Query: 61  MPFFPRQALQAWKLGLIHPATGKQVEWEVGLPEDFTELLERAGI 104
            P F RQALQA +LGL+HP TG+ VEW V L +DF  L+  A I
Sbjct: 296 APAFHRQALQARRLGLVHPVTGEDVEWRVPLADDFAALIASAEI 339


>D8J0D5.1 D8J0D5_HERSS Pseudouridine synthase EC=5.4.99.-
          Length = 370

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 84/105 (80%)

Query: 1   MTAKPAVTHYRRAAVGALDGRAVSLMRCQLETGRTHQIRVHMQSLGFALVGDALYGKSHL 60
           M AKPAVTHYRR A G +D + VSL+ C+LETGRTHQIRVH+QSLGF LVGDALYGK HL
Sbjct: 240 MRAKPAVTHYRRLATGEIDRKPVSLIHCRLETGRTHQIRVHLQSLGFPLVGDALYGKHHL 299

Query: 61  MPFFPRQALQAWKLGLIHPATGKQVEWEVGLPEDFTELLERAGID 105
           +  FPRQAL A +LGL+HP+TGK  +W   LPED   LL+RAGID
Sbjct: 300 VSVFPRQALLAGRLGLLHPSTGKFRQWAAPLPEDIVALLQRAGID 344


>C3XB39.1 C3XB39_OXAFO Pseudouridine synthase EC=5.4.99.-
          Length = 342

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 79/104 (75%)

Query: 2   TAKPAVTHYRRAAVGALDGRAVSLMRCQLETGRTHQIRVHMQSLGFALVGDALYGKSHLM 61
           + KPAVTH+R+ A G  +   VSL++C+LETGRTHQIRVH+QS+GF LVGD +YGKSHL 
Sbjct: 228 SGKPAVTHFRKIAEGVCNNMNVSLVKCRLETGRTHQIRVHLQSIGFPLVGDPVYGKSHLA 287

Query: 62  PFFPRQALQAWKLGLIHPATGKQVEWEVGLPEDFTELLERAGID 105
             FPRQAL A++LGLIHP T +  EW   LP+D   LLE++ I+
Sbjct: 288 SVFPRQALHAFRLGLIHPCTKEVCEWTAPLPQDMKALLEQSFIE 331