BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0051.p         (111 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SUN7.1 RL13_JANMA 50S ribosomal protein L13                         223   6e-57
D8IRY5.1 D8IRY5_HERSS 50S ribosomal protein L13                       223   1e-56
F1W176.1 F1W176_9BURK LSU ribosomal protein L13p (L13Ae)              217   5e-55
A4G1T2.1 RL13_HERAR 50S ribosomal protein L13                         217   6e-55
D5NRJ4.1 D5NRJ4_9BURK 50S ribosomal protein L13                       206   1e-51

>A6SUN7.1 RL13_JANMA 50S ribosomal protein L13
          Length = 142

 Score =  223 bits (569), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/111 (97%), Positives = 109/111 (98%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+  HPHAAQQPKALEL
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHPHAAQQPKALEL 142


>D8IRY5.1 D8IRY5_HERSS 50S ribosomal protein L13
          Length = 142

 Score =  223 bits (567), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/111 (96%), Positives = 109/111 (98%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVV+NAGKLRVTGTKATEKTY+RHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVVNAGKLRVTGTKATEKTYFRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPK L L
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKPLAL 142


>F1W176.1 F1W176_9BURK LSU ribosomal protein L13p (L13Ae)
          Length = 142

 Score =  217 bits (552), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/111 (91%), Positives = 107/111 (96%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFI+VINAGKLRVTG+KATE+TYYRHSGYPGGIYETNFLK
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIIVINAGKLRVTGSKATERTYYRHSGYPGGIYETNFLK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQQRFPGRALEKAVKGMLPKGPLGYAMI KLKVYA+  HPH+AQQPK LEL
Sbjct: 92  MQQRFPGRALEKAVKGMLPKGPLGYAMITKLKVYAEATHPHSAQQPKVLEL 142


>A4G1T2.1 RL13_HERAR 50S ribosomal protein L13
          Length = 142

 Score =  217 bits (552), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 108/111 (97%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VALRLRGKHKPEFTPHVDTGDFIVV+NAGKLRVTGTKAT+KTYYRHSGYPGGIYETNF K
Sbjct: 32  VALRLRGKHKPEFTPHVDTGDFIVVVNAGKLRVTGTKATDKTYYRHSGYPGGIYETNFKK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQ+RFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+  HPHAAQQPKALEL
Sbjct: 92  MQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEETHPHAAQQPKALEL 142


>D5NRJ4.1 D5NRJ4_9BURK 50S ribosomal protein L13
          Length = 142

 Score =  206 bits (524), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/111 (88%), Positives = 104/111 (93%)

Query: 1   VALRLRGKHKPEFTPHVDTGDFIVVINAGKLRVTGTKATEKTYYRHSGYPGGIYETNFLK 60
           VA RLRGKHKPEFTPHVDTGDFI+VINAGKLRVTG KAT+K YYRHSGYPGGIYET F K
Sbjct: 32  VAHRLRGKHKPEFTPHVDTGDFIIVINAGKLRVTGNKATDKKYYRHSGYPGGIYETTFGK 91

Query: 61  MQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYADGNHPHAAQQPKALEL 111
           MQ+RFPGRALEKAVKGMLPKGPLGYAMIKKLKVYA+  HPH+AQQPKALE+
Sbjct: 92  MQERFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEATHPHSAQQPKALEI 142