BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0041.p         (138 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1W3K4.1 F1W3K4_9BURK Twitching motility protein PilG                 188   3e-46
A4G8M7.1 A4G8M7_HERAR Type IV pilus response regulator PilG           183   8e-45
A6T299.1 A6T299_JANMA PilG twitching motility two-component syst...   179   9e-44
C5T536.1 C5T536_ACIDE Response regulator receiver protein             174   3e-42
E8TQJ4.1 E8TQJ4_ALIDB Response regulator receiver                     173   7e-42

>F1W3K4.1 F1W3K4_9BURK Twitching motility protein PilG
          Length = 143

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 110/137 (80%), Gaps = 2/137 (1%)

Query: 2   TDVQARHSFTILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDV 61
           T+     S  ++V+DDS+TIRRSA +FLGQAG+QV+LAEDGFDAL+++ D  P LIFCD+
Sbjct: 5   TETPEPASLKVMVIDDSSTIRRSAEIFLGQAGYQVVLAEDGFDALAKMNDSRPALIFCDI 64

Query: 62  LMPRLDGYQTCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGM 121
           LMPRLDGYQTCALIKK+ARFHATPV+MLSSKDGLFDRA   GA+VG+ A++TKPFT+D +
Sbjct: 65  LMPRLDGYQTCALIKKSARFHATPVIMLSSKDGLFDRA--RGALVGSDAYLTKPFTKDSL 122

Query: 122 LQAVRTYAGGQAAAAHL 138
           L+ VR +     A   L
Sbjct: 123 LKIVREFTATTQAVPVL 139


>A4G8M7.1 A4G8M7_HERAR Type IV pilus response regulator PilG
          Length = 133

 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 107/123 (86%), Gaps = 2/123 (1%)

Query: 12  ILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDGYQT 71
           I+V+DDS+TIRRSA +FLGQAG++V+LA+DGFDAL+++ D  P LIFCD+LMPRLDGYQT
Sbjct: 12  IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHKPALIFCDILMPRLDGYQT 71

Query: 72  CALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTYAGG 131
           CALIKK+A+FH+TPV+MLSSKDGLFDRA   GA+VG+ A++TKPFT+D +L+ VR YA  
Sbjct: 72  CALIKKSAKFHSTPVIMLSSKDGLFDRA--RGAMVGSDAYLTKPFTKDSLLKTVREYAAE 129

Query: 132 QAA 134
             A
Sbjct: 130 AVA 132


>A6T299.1 A6T299_JANMA PilG twitching motility two-component system response
           regulator
          Length = 133

 Score =  179 bits (455), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 106/118 (89%), Gaps = 2/118 (1%)

Query: 12  ILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDGYQT 71
           I+V+DDS+TIRRSA +FLGQAG++V+LA+DGFDAL+++ D  P LIFCD+LMPRLDGYQT
Sbjct: 12  IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHRPALIFCDILMPRLDGYQT 71

Query: 72  CALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTYA 129
           CALIKK+A+FH+TPV+MLSSKDGLFDRA   GA+VG+ A++TKPFT+D +L+ VR +A
Sbjct: 72  CALIKKSAKFHSTPVIMLSSKDGLFDRA--RGAMVGSDAYLTKPFTKDSLLKTVREHA 127


>C5T536.1 C5T536_ACIDE Response regulator receiver protein
          Length = 132

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 102/127 (80%), Gaps = 2/127 (1%)

Query: 9   SFTILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDG 68
           SF +LVVDDS TIRRSA +FL Q GH+V+LA+DGFDAL+++ D  P LIFCD+LMP+LDG
Sbjct: 7   SFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDG 66

Query: 69  YQTCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTY 128
           YQTCA+IK+NARF  TPVVMLSSKDG+FD+A   G +VG   ++TKPFT+D +LQAV+ +
Sbjct: 67  YQTCAIIKRNARFADTPVVMLSSKDGVFDKA--RGRMVGCQEYLTKPFTKDQLLQAVQQF 124

Query: 129 AGGQAAA 135
              Q  A
Sbjct: 125 GNSQQGA 131


>E8TQJ4.1 E8TQJ4_ALIDB Response regulator receiver
          Length = 134

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 102/127 (80%), Gaps = 2/127 (1%)

Query: 9   SFTILVVDDSATIRRSAALFLGQAGHQVMLAEDGFDALSQLGDCTPDLIFCDVLMPRLDG 68
           +F +LVVDDS TIRRSA +FL Q GH+V+LA+DGFDAL+++ D  P LIFCD+LMP+LDG
Sbjct: 9   TFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYRPQLIFCDILMPKLDG 68

Query: 69  YQTCALIKKNARFHATPVVMLSSKDGLFDRAXDSGAIVGAAAFMTKPFTEDGMLQAVRTY 128
           YQTCA+IK+NARF  TPVVMLSSKDG+FD+A   G +VG   ++TKPFT+D +LQAV+ +
Sbjct: 69  YQTCAIIKRNARFADTPVVMLSSKDGVFDKA--RGRMVGCQEYLTKPFTKDQLLQAVQQF 126

Query: 129 AGGQAAA 135
              Q  A
Sbjct: 127 GNAQQGA 133