BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0036.p         (151 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T296.1 A6T296_JANMA PilJ twitching motility protein                 211   4e-53
F1VYQ9.1 F1VYQ9_9BURK Twitching motility protein PilJ                 209   1e-52
A4G8M4.1 A4G8M4_HERAR Putative twitching motility transmembrane ...   208   2e-52
D8IRX5.1 D8IRX5_HERSS Twitching motility transmembrane protein        188   3e-46
C7RK05.1 C7RK05_ACCPU Methyl-accepting chemotaxis sensory transd...   186   8e-46

>A6T296.1 A6T296_JANMA PilJ twitching motility protein
          Length = 760

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 123/134 (91%)

Query: 1   MTSAGQIQARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKG 60
           +  A Q Q+R I +TGQ++L+M++QITDVS SAN+SA+VAR SV  AE G++AVE+A+KG
Sbjct: 504 LLEASQKQSRDIQETGQAVLDMAVQITDVSKSANESAEVARQSVTAAEEGSRAVENAIKG 563

Query: 61  MNEIREQIQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGF 120
           MNEIREQIQETSKRIKRLGESSQEIGEITELISDIT+QTNVLALNAAIQAASAGEAGRGF
Sbjct: 564 MNEIREQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGF 623

Query: 121 SVVAEEVQRLAERS 134
           SVVAEEVQRLAERS
Sbjct: 624 SVVAEEVQRLAERS 637


>F1VYQ9.1 F1VYQ9_9BURK Twitching motility protein PilJ
          Length = 675

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 124/134 (92%)

Query: 1   MTSAGQIQARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKG 60
           + +A Q Q+R I +TGQ++L+M++QITDVS SAN+SADVAR SV  A+ GA+AVE+A+KG
Sbjct: 419 LLTASQRQSREIRETGQAVLDMALQITDVSKSANESADVARQSVSAADEGAQAVENAIKG 478

Query: 61  MNEIREQIQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGF 120
           M+EIREQIQETSKRIKRLGESSQEIGEITELISDIT+QTNVLALNAAIQAASAGEAGRGF
Sbjct: 479 MHEIREQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGF 538

Query: 121 SVVAEEVQRLAERS 134
           SVVAEEVQRLAERS
Sbjct: 539 SVVAEEVQRLAERS 552


>A4G8M4.1 A4G8M4_HERAR Putative twitching motility transmembrane protein
           PilJ-like
          Length = 757

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 123/134 (91%)

Query: 1   MTSAGQIQARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKG 60
           +  A   Q+R I +TGQ++LEM++QITDVS SA++SA+VAR SV  AE+G++AVE+A+KG
Sbjct: 501 LLEASHKQSRDIQETGQAVLEMAVQITDVSKSASESAEVARQSVTAAEQGSRAVENAIKG 560

Query: 61  MNEIREQIQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGF 120
           MNEIREQIQETSKRIKRLGESSQEIGEITELISDIT+QTNVLALNAAIQAASAGEAGRGF
Sbjct: 561 MNEIREQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGF 620

Query: 121 SVVAEEVQRLAERS 134
           SVVAEEVQRLAERS
Sbjct: 621 SVVAEEVQRLAERS 634


>D8IRX5.1 D8IRX5_HERSS Twitching motility transmembrane protein
          Length = 753

 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 109/118 (92%)

Query: 19  MLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQIQETSKRIKRL 78
           MLEMS+QIT +S+SA++SADVARH+V+ AERG +AVE+A+K MN IREQIQETS RI RL
Sbjct: 514 MLEMSMQITGISVSADESADVARHAVLAAERGERAVENAIKAMNGIREQIQETSGRITRL 573

Query: 79  GESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSSA 136
           GESSQ IGEITELISDIT++TNVLALNAAIQAASAGEAGRGFSVVAEEVQ LAERSSA
Sbjct: 574 GESSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSA 631


>C7RK05.1 C7RK05_ACCPU Methyl-accepting chemotaxis sensory transducer
          Length = 721

 Score =  186 bits (473), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 115/134 (85%)

Query: 1   MTSAGQIQARRIHDTGQSMLEMSIQITDVSISANKSADVARHSVVVAERGAKAVEDAVKG 60
           + +A + QA  I  TGQS+L M+  +T+VS  A +S+ VAR S+  A++GA+AVE ++KG
Sbjct: 466 LLAAAERQATEIKATGQSVLAMATSMTNVSADAKQSSTVARQSLAAADKGAQAVEASIKG 525

Query: 61  MNEIREQIQETSKRIKRLGESSQEIGEITELISDITDQTNVLALNAAIQAASAGEAGRGF 120
           MN+IREQIQETSKRIKRLGESSQEIGEI ELISDIT+QTNVLALNAAIQAASAGEAGRGF
Sbjct: 526 MNKIREQIQETSKRIKRLGESSQEIGEIVELISDITEQTNVLALNAAIQAASAGEAGRGF 585

Query: 121 SVVAEEVQRLAERS 134
           +VVAEEVQRLAERS
Sbjct: 586 TVVAEEVQRLAERS 599