BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0034.p         (463 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G8M3.1 A4G8M3_HERAR Putative chemotaxis protein histidine kinase    102   2e-19
F1VXJ1.1 F1VXJ1_9BURK Putative composite two component regulator...    98   3e-18
A6T295.1 A6T295_JANMA Two-component hybrid sensor and regulator        92   2e-16
Q12EF0.1 Q12EF0_POLSJ CheA signal transduction histidine kinase        92   2e-16
E7RU77.1 E7RU77_9BURK Type IV pili sensor histidine kinase and r...    89   2e-15

>A4G8M3.1 A4G8M3_HERAR Putative chemotaxis protein histidine kinase
          Length = 1969

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 246 NIAAAPDMAAPMAPPDAP-KTEPAVQP--PQLAPQQPDEIDADLREVFLLEANEVLDNIR 302
           +  A+PD    +A   AP K    V+   P +AP   + IDA+L E+FL EA EVLD ++
Sbjct: 677 DFVASPDAMEDIALATAPAKVVSQVKEIAPLVAPASDEAIDAELLEIFLSEAVEVLDCVK 736

Query: 303 HALAASHATPDDMAQVVVLRRSFHTLKGSGRMVGLNALGRGAMALEEFATAWSAAGRSGT 362
             +  S   P +   +  LRRSFHTLKGSGRMVGL ALG  A ++E+      +  R G 
Sbjct: 737 QTIPDSRNAPHNQEFLTTLRRSFHTLKGSGRMVGLIALGEAAWSVEQVLNLRLSETRGGD 796

Query: 363 TGDYALLDYTVAELSAWIDEISANGNSPRSPDRLLAAVAG 402
              YALL+  V  L AW+ ++   G S RS   L+ A  G
Sbjct: 797 PELYALLENAVQVLDAWVSDLQTQGRSDRSGRALINAAEG 836


>F1VXJ1.1 F1VXJ1_9BURK Putative composite two component regulatory (Sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein
          Length = 1331

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 269 VQPPQLAPQQPDEIDADLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTL 328
           V P   APQ    +DA+L ++FL EA EVL+++R  L   HA P D  Q+  LRR FHTL
Sbjct: 230 VAPVMPAPQTEAAVDAELLDIFLGEAEEVLESVRTTLPQLHANPQDNFQLASLRRGFHTL 289

Query: 329 KGSGRMVGLNALGRGAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGN 388
           KGSGRMVGL+ALG  A ++E+      A  +  T    AL+      L+AW+ E+ A+G 
Sbjct: 290 KGSGRMVGLDALGNAAWSIEQVLNRQVADEKGATPDVLALIGQAEQLLTAWVGELRADGY 349

Query: 389 SPRSPDRLLAA----VAGXPMP 406
             R    L+ A    + G P+P
Sbjct: 350 CARDGVALIDAAQCLLDGVPLP 371


>A6T295.1 A6T295_JANMA Two-component hybrid sensor and regulator
          Length = 1901

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 67/122 (54%)

Query: 270 QPPQLAPQQPDEIDADLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTLK 329
           + P+  P   + IDA+L E+FL EA EVLD ++     S   P +   +  LRRSFHTLK
Sbjct: 663 ETPRATPVSDEAIDAELLEIFLSEAVEVLDCVKQTTPESRNAPHNQEYLTTLRRSFHTLK 722

Query: 330 GSGRMVGLNALGRGAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGNS 389
           GSGRMVGL A G  A ++E+      +  R G    YALL+     L AW+ ++   G S
Sbjct: 723 GSGRMVGLLAFGETAWSVEQVLNLRLSETRGGDPDLYALLENATQVLDAWVHDLQTQGRS 782

Query: 390 PR 391
            R
Sbjct: 783 DR 784


>Q12EF0.1 Q12EF0_POLSJ CheA signal transduction histidine kinase
          Length = 2070

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 67/105 (63%)

Query: 285 DLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTLKGSGRMVGLNALGRGA 344
           DLR++FL EA EV+ N + AL A  +   D+AQ+ VLRR+FHTLKGS RMVGLN  G  A
Sbjct: 696 DLRDIFLEEAREVVGNGQEALLALASDSGDVAQLTVLRRAFHTLKGSSRMVGLNEFGEAA 755

Query: 345 MALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISANGNS 389
            +LE+   +W A  ++ T    +L    +   + WI++I+AN ++
Sbjct: 756 WSLEQMLNSWLADQKTATDEFKSLATEAMTGFAKWIEDIAANEDA 800


>E7RU77.1 E7RU77_9BURK Type IV pili sensor histidine kinase and response
           regulator
          Length = 2181

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 58/103 (56%)

Query: 283 DADLREVFLLEANEVLDNIRHALAASHATPDDMAQVVVLRRSFHTLKGSGRMVGLNALGR 342
           +A+L E+FLLEA EVLD I   L      PDD   +  +RR FHTLKGS RMVGL+A G 
Sbjct: 697 EAELHEIFLLEAAEVLDAIDENLGVVRKAPDDREAMTTIRRGFHTLKGSSRMVGLDAFGE 756

Query: 343 GAMALEEFATAWSAAGRSGTTGDYALLDYTVAELSAWIDEISA 385
            A A E+    W +  + GTT  + L+        +W +++ A
Sbjct: 757 AAWAFEQMMNHWLSEDKDGTTPLFELIQDGANFFRSWCEQLQA 799