BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0024.p         (87 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1W0B9.1 F1W0B9_9BURK Putative Exodeoxyribonuclease VII small su...   115   3e-24
A4G1W7.1 EX7S_HERAR Exodeoxyribonuclease 7 small subunit EC=3.1....   115   3e-24
A6SUS2.1 EX7S_JANMA Exodeoxyribonuclease 7 small subunit EC=3.1....   113   7e-24
D8IRW8.1 D8IRW8_HERSS Exodeoxyribonuclease 7 small subunit EC=3....   107   5e-22
Q0K858.1 Q0K858_CUPNH Exodeoxyribonuclease 7 small subunit EC=3....   100   9e-20

>F1W0B9.1 F1W0B9_9BURK Putative Exodeoxyribonuclease VII small subunit
          (Exonuclease VII small subunit) (XseB)
          Length = 93

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 63/74 (85%)

Query: 1  MPKNPVKVSQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVD 60
          M K       PASFE+AM EL +LV QMEAGELPLEASVAAYKRG+ELVKFC+VQLDKVD
Sbjct: 11 MSKKLPSADTPASFEDAMAELARLVAQMEAGELPLEASVAAYKRGSELVKFCAVQLDKVD 70

Query: 61 SQVKVLEGDMLKPL 74
          SQV+VLEGDMLKPL
Sbjct: 71 SQVRVLEGDMLKPL 84


>A4G1W7.1 EX7S_HERAR Exodeoxyribonuclease 7 small subunit EC=3.1.11.6
          Length = 84

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 63/74 (85%)

Query: 1  MPKNPVKVSQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVD 60
          M K     + P+SFEEAM ELEQLV +MEAGELPLEASVAAYKRG+ELVK+C+ QL+KVD
Sbjct: 1  MSKKSTSAALPSSFEEAMAELEQLVARMEAGELPLEASVAAYKRGSELVKYCAAQLEKVD 60

Query: 61 SQVKVLEGDMLKPL 74
          SQVKVLEGDMLKP 
Sbjct: 61 SQVKVLEGDMLKPF 74


>A6SUS2.1 EX7S_JANMA Exodeoxyribonuclease 7 small subunit EC=3.1.11.6
          Length = 84

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 63/74 (85%)

Query: 1  MPKNPVKVSQPASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVD 60
          M K     + P+SFEEAM ELEQLV +MEAGELPLEASVAAYKRG+ELVK+C+ QL+KVD
Sbjct: 1  MSKKSTSAALPSSFEEAMAELEQLVARMEAGELPLEASVAAYKRGSELVKYCAAQLEKVD 60

Query: 61 SQVKVLEGDMLKPL 74
          +QVKVLEGDMLKP 
Sbjct: 61 NQVKVLEGDMLKPF 74


>D8IRW8.1 D8IRW8_HERSS Exodeoxyribonuclease 7 small subunit EC=3.1.11.6
          Length = 92

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 58/61 (95%)

Query: 14 FEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVDSQVKVLEGDMLKP 73
          FE+AM+ELEQLV QMEAGELPLEASVAAYKRG+ELVKFC+ QLDKVD+QVK+LEGDMLKP
Sbjct: 22 FEQAMQELEQLVAQMEAGELPLEASVAAYKRGSELVKFCAAQLDKVDTQVKLLEGDMLKP 81

Query: 74 L 74
           
Sbjct: 82 F 82


>Q0K858.1 Q0K858_CUPNH Exodeoxyribonuclease 7 small subunit EC=3.1.11.6
          Length = 102

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 11 PASFEEAMEELEQLVIQMEAGELPLEASVAAYKRGAELVKFCSVQLDKVDSQVKVLEGDM 70
          PAS+E AM ELE LV  ME+GELPLEAS+AAY+RGAELV++C  +L++V+ QV+VLEGD+
Sbjct: 23 PASYEAAMAELETLVASMESGELPLEASLAAYRRGAELVRYCQQKLERVEQQVRVLEGDV 82

Query: 71 LKPLLGTGVG 80
          LKPL G G G
Sbjct: 83 LKPLAGEGNG 92