BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0019.p (263 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRW3.1 D8IRW3_HERSS Transcription regulator protein 484 e-135 A6SUS7.1 A6SUS7_JANMA Transcriptional regulator 404 e-111 F1W464.1 F1W464_9BURK Putative transcription regulator protein, ... 400 e-110 A4G1X2.1 A4G1X2_HERAR Putative transcription regulator protein, ... 395 e-108 Q1LJ78.1 Q1LJ78_RALME Transcriptional regulator, LysR-family 236 2e-60 >D8IRW3.1 D8IRW3_HERSS Transcription regulator protein Length = 296 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/259 (90%), Positives = 248/259 (95%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MATRLPPVHALSAFEAAARHNSFA+AAEELCITPSALSHRIRLLEEFVGERLF+RDGRSI Sbjct: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSI 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 GLSEFGRRYLDVVRSALRTLTDFPMPHRNA VQPK+K+MLPPTFARHLL+PRIA+FTQR+ Sbjct: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPL 180 P+I VE+YLSVPLYDLSLSESDVEIRFGAGNYPN +TEKLFEEPAFAVASPAYLKT+PP+ Sbjct: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPM 180 Query: 181 KGPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTR 240 K P DL A LLRSALEPWQPWFEAAGLKDW EPS GLRVDDLGLLLE+VRHGYGVGLTR Sbjct: 181 KSPADLKQATLLRSALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTR 240 Query: 241 QHFAEELLARGEIVELFXI 259 QHFAEELLARGEIVELF I Sbjct: 241 QHFAEELLARGEIVELFDI 259 >A6SUS7.1 A6SUS7_JANMA Transcriptional regulator Length = 298 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/260 (75%), Positives = 223/260 (85%), Gaps = 1/260 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MA RLPPVHALSAFEAAARH SFA+AAEELCITPSA SHRIRLLEEFVGERLF RDGRS+ Sbjct: 1 MAIRLPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 L+EFGRRYLDVVR ALR+L DFP+PHR+ QP+VKI +PPTFAR+L +P +A+FT Y Sbjct: 61 SLTEFGRRYLDVVRDALRSLADFPLPHRHPLAQPRVKITVPPTFARYLFLPHLADFTALY 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPL 180 PDIT+E++LSVPLYD++LSE+D+EIRFGAG YP+ TEKLFEEP F V SPAYL+ I L Sbjct: 121 PDITIEVFLSVPLYDMALSETDLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYLEKIGGL 180 Query: 181 KGPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTR 240 K P DL A LLRSALEPWQ WFE AGL DWPEP+TGLR+DDLGLLLE+VRHGYGV LTR Sbjct: 181 KTPADLQKAQLLRSALEPWQAWFEVAGL-DWPEPATGLRIDDLGLLLEAVRHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFXIH 260 +HFAEE++A GE+V LF I Sbjct: 240 KHFAEEMIANGEVVPLFDIQ 259 >F1W464.1 F1W464_9BURK Putative transcription regulator protein, LysR family Length = 293 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/259 (76%), Positives = 222/259 (85%), Gaps = 1/259 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MA+RLPPVHALSAFEAAAR SFA+AAEELCITPSALSHRIRLLE+FVGERLF RD RS+ Sbjct: 1 MASRLPPVHALSAFEAAARFLSFALAAEELCITPSALSHRIRLLEDFVGERLFIRDSRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 LS+FGRRYL+VVRSALR L DFPMPHR QP++KI +PPTFAR+LLVP++A+F + Sbjct: 61 ALSDFGRRYLEVVRSALRALNDFPMPHRGVPAQPRLKITVPPTFARYLLVPKLAQFMALH 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPL 180 P I VE++LSVPLYDLSLSESDVEIRFGAG Y N VT KLFEEPAFAVASPAYL +I + Sbjct: 121 PHIAVELFLSVPLYDLSLSESDVEIRFGAGKYANIVTRKLFEEPAFAVASPAYLASIGGI 180 Query: 181 KGPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTR 240 P DL ANLLRSALEPWQPWFEAAGL DWPEP TGLRVDDLGLLLESV+HG+G+GLTR Sbjct: 181 ATPADLKKANLLRSALEPWQPWFEAAGL-DWPEPGTGLRVDDLGLLLESVKHGHGIGLTR 239 Query: 241 QHFAEELLARGEIVELFXI 259 QHF ++A GE+V LF I Sbjct: 240 QHFGAGMIATGEVVRLFDI 258 >A4G1X2.1 A4G1X2_HERAR Putative transcription regulator protein, LysR family Length = 299 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/260 (73%), Positives = 219/260 (84%), Gaps = 1/260 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MA+RLPPVHALSAFEAAARH SFAVAAEELCITPSA SHRIRLLE+FVGERLF RDGRS+ Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 L+EFGRRYLDVVR AL +L DFP+PHR A+ Q KVK+ +PPTFAR+L +P + EF + Sbjct: 61 SLTEFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALH 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPL 180 P+I++E YLSVPLYD+SLSE+D+E+RFGAG YP+ VTEKLF EP F VASPAYL+ I L Sbjct: 121 PEISIETYLSVPLYDMSLSETDIEVRFGAGKYPDIVTEKLFREPVFPVASPAYLEQIGKL 180 Query: 181 KGPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTR 240 P DL A LLRSALEPWQPWFE AGL DW EPSTGLR+DDLGLLLE+V+HGYGV LTR Sbjct: 181 NVPADLQKAQLLRSALEPWQPWFEMAGL-DWQEPSTGLRIDDLGLLLEAVKHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFXIH 260 QHFA +++A GEIV LF + Sbjct: 240 QHFAADMIASGEIVSLFDLQ 259 >Q1LJ78.1 Q1LJ78_RALME Transcriptional regulator, LysR-family Length = 296 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/258 (47%), Positives = 169/258 (65%), Gaps = 4/258 (1%) Query: 4 RLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSIGLS 63 R+PP+H L AFEAAAR SFA AAEEL +TPSA+SHRI+ LEE G+ LF R ++ L+ Sbjct: 7 RVPPLHLLIAFEAAARLGSFARAAEELSVTPSAVSHRIKNLEELWGDDLFVRSNAALRLT 66 Query: 64 EFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRYPDI 123 G RY V+ AL++L + P N ++ ++++ +PPTF R LVPR+ EFT YP I Sbjct: 67 AAGTRYQRNVQDALKSLNELARPEYN-KLRTRLRVAIPPTFGRQHLVPRLPEFTALYPHI 125 Query: 124 TVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIP--PLK 181 +E++L+VP D+ ++D+EIR+G G YP+ T KL EP F Y + + + Sbjct: 126 DLELHLAVPFLDVKAEDTDIEIRYGTGRYPDLKTTKLLVEPVFPACGREYYERVNGFAVT 185 Query: 182 GPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTRQ 241 P+DL + LLRS LEPW+PWFE A L DWPEP TG + +D+GL+LE++ GVGL RQ Sbjct: 186 KPEDLHNLTLLRSPLEPWRPWFETACL-DWPEPQTGAQFNDIGLMLEAIVSNQGVGLVRQ 244 Query: 242 HFAEELLARGEIVELFXI 259 A + LA G++V+L I Sbjct: 245 RMARQWLAAGQMVKLLDI 262