BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0009.p         (95 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A1WET0.1 A1WET0_VEREI RND efflux system, outer membrane lipoprot...   125   2e-27
E6UX90.1 E6UX90_VARPD RND efflux system, outer membrane lipoprot...   124   6e-27
D8IWG0.1 D8IWG0_HERSS Outer membrane channel lipoprotein              110   5e-23
D8MWB7.1 D8MWB7_ERWBE RND efflux system, outer membrane lipoprotein    93   1e-17
C6BN78.1 C6BN78_RALP1 RND efflux system, outer membrane lipoprot...    92   2e-17

>A1WET0.1 A1WET0_VEREI RND efflux system, outer membrane lipoprotein, NodT
          family
          Length = 478

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 61/75 (81%)

Query: 1  LSAIATALLLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLN 60
          L  +A AL LG CAVGPDYVRP +DLP  YKEQGPWK A PG+IDS QRWWEAY D+VLN
Sbjct: 18 LGVLACALFLGACAVGPDYVRPAMDLPVVYKEQGPWKIATPGRIDSRQRWWEAYQDAVLN 77

Query: 61 GLIEQANQANQNIRL 75
           LI+QAN+ANQNIR 
Sbjct: 78 DLIDQANRANQNIRF 92


>E6UX90.1 E6UX90_VARPD RND efflux system, outer membrane lipoprotein, NodT
          family
          Length = 492

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 63/76 (82%)

Query: 7  ALLLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLNGLIEQA 66
          ALLL GCAVGPDYVRPQ+D+P AYKE GPWK A+P  ID++  WWEAY D+ L+ L+ QA
Sbjct: 21 ALLLAGCAVGPDYVRPQMDVPVAYKETGPWKTAKPQLIDASHPWWEAYGDTTLSALVVQA 80

Query: 67 NQANQNIRLAEAQYRQ 82
          N ANQNIR+AEAQYR+
Sbjct: 81 NAANQNIRVAEAQYRE 96


>D8IWG0.1 D8IWG0_HERSS Outer membrane channel lipoprotein
          Length = 510

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 56/73 (76%)

Query: 1   LSAIATALLLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLN 60
           ++A+  A LLGGCAVGPDY RP LDLP AYKE GPWK A P QID +Q WWEAY D VLN
Sbjct: 35  MTALVLAALLGGCAVGPDYARPALDLPQAYKETGPWKLAAPRQIDDHQPWWEAYGDPVLN 94

Query: 61  GLIEQANQANQNI 73
            L++QAN ANQ I
Sbjct: 95  ALMDQANAANQTI 107


>D8MWB7.1 D8MWB7_ERWBE RND efflux system, outer membrane lipoprotein
          Length = 466

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 57/85 (67%)

Query: 1  LSAIATALLLGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLN 60
          L+ +  AL+L GCAVGPDY RP   +P+ YKE   W++A+P   DS   WW  Y+D  L 
Sbjct: 6  LTPVLLALILSGCAVGPDYHRPTASVPSQYKEAKGWQQAKPQDADSKGAWWAVYHDESLA 65

Query: 61 GLIEQANQANQNIRLAEAQYRQAQA 85
          GL++Q + +NQN+   EAQYRQAQA
Sbjct: 66 GLLQQVSISNQNVAQYEAQYRQAQA 90


>C6BN78.1 C6BN78_RALP1 RND efflux system, outer membrane lipoprotein, NodT
          family
          Length = 501

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 51/76 (67%)

Query: 10 LGGCAVGPDYVRPQLDLPTAYKEQGPWKKAEPGQIDSNQRWWEAYNDSVLNGLIEQANQA 69
          +  CAVGPDY RP  ++P  YKE G WK A+P    +  +WWE +ND  LN L EQ   A
Sbjct: 21 VSACAVGPDYKRPDAEVPQQYKEAGDWKVADPSDAIARGKWWEIFNDPQLNALEEQVAAA 80

Query: 70 NQNIRLAEAQYRQAQA 85
          NQNI +AEAQYRQAQA
Sbjct: 81 NQNILVAEAQYRQAQA 96