BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0007.p         (113 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IRV3.1 D8IRV3_HERSS TRAP-type C4-dicarboxylate transport syste...   120   5e-26
E1THZ2.1 E1THZ2_BURSG TRAP dicarboxylate transporter, DctP subunit    120   5e-26
B1Y4S4.1 B1Y4S4_LEPCP TRAP dicarboxylate transporter, DctP subunit    104   4e-21
A1WSA1.1 A1WSA1_VEREI TRAP dicarboxylate transporter, DctP subunit    103   1e-20
D4XET9.1 D4XET9_9BURK TrapT family                                    101   3e-20

>D8IRV3.1 D8IRV3_HERSS TRAP-type C4-dicarboxylate transport system,
          periplasmic component protein
          Length = 344

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 4  MTRRHFLKTASVASAAAATGLYAGSASAAAEFTLKYGNNLPMTHPMNVRAKEMAARIAAE 63
          +TRR+FLKTASVASAAAATGL + SA AA EFT KY NNLP+THPMN RAKEMAA IA +
Sbjct: 8  ITRRNFLKTASVASAAAATGLVSTSAHAA-EFTFKYANNLPVTHPMNARAKEMAAAIAEQ 66

Query: 64 SKGRVDFQVYPNGQLGTDTDMLSQVRXAEV 93
          SKGR++ Q+YPN QLGTDTDMLSQVR   +
Sbjct: 67 SKGRIELQLYPNNQLGTDTDMLSQVRAGAI 96


>E1THZ2.1 E1THZ2_BURSG TRAP dicarboxylate transporter, DctP subunit
          Length = 339

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 75/93 (80%), Gaps = 1/93 (1%)

Query: 1  MHAMTRRHFLKTASVASAAAATGLYAGSASAAAEFTLKYGNNLPMTHPMNVRAKEMAARI 60
          M   +RR FLK AS+A+AA+  GL+ G ++ AAEFTLKY NNLP THPMNVRAK+ AARI
Sbjct: 1  MSVTSRRDFLKCASLAAAASFAGLH-GRSAHAAEFTLKYANNLPATHPMNVRAKQAAARI 59

Query: 61 AAESKGRVDFQVYPNGQLGTDTDMLSQVRXAEV 93
          A+ESKGR+DFQVY N QLG+DTDMLSQVR   +
Sbjct: 60 ASESKGRIDFQVYSNNQLGSDTDMLSQVRSGAI 92


>B1Y4S4.1 B1Y4S4_LEPCP TRAP dicarboxylate transporter, DctP subunit
          Length = 338

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 65/91 (71%), Gaps = 4/91 (4%)

Query: 4  MTRRHFLK-TASVASAAAATGLYAGSASAAAEFTLKYGNNLPMTHPMNVRAKEMAARIAA 62
          +TRR  L  T ++A    AT   A +    AEFTLKY NNLP+THPMNVRA EMAA I A
Sbjct: 3  ITRRTLLAGTGALALPGVATHALAQNK---AEFTLKYANNLPITHPMNVRATEMAAAILA 59

Query: 63 ESKGRVDFQVYPNGQLGTDTDMLSQVRXAEV 93
          ESKGRVD +V+P+ QLGTDTDMLSQ+R   +
Sbjct: 60 ESKGRVDLKVFPSSQLGTDTDMLSQIRSGAI 90


>A1WSA1.1 A1WSA1_VEREI TRAP dicarboxylate transporter, DctP subunit
          Length = 337

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 3  AMTRRHFLKTASVASAAAATGLYAGSASAAAEFTLKYGNNLPMTHPMNVRAKEMAARIAA 62
          A+ RR  L+  S A+  A  G+   + +  AEFT KY NNLP THPMN+RAKEMAA + A
Sbjct: 2  AIARRTLLR--STAAVVALPGVIERAFAQKAEFTYKYANNLPATHPMNLRAKEMAAAVLA 59

Query: 63 ESKGRVDFQVYPNGQLGTDTDMLSQVRXAEV 93
          ESKGRVD QV+P  QLG DTDMLSQ+R   +
Sbjct: 60 ESKGRVDIQVFPANQLGNDTDMLSQLRAGGI 90


>D4XET9.1 D4XET9_9BURK TrapT family
          Length = 339

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 1  MHAMTRRHFLKTASVASAAAATGLYAGSASAAAEFTLKYGNNLPMTHPMNVRAKEMAARI 60
          M  +TRR  L+      A A  G +   A AA ++TLKYGNNLP+THP+NVRA+E A RI
Sbjct: 1  MKLLTRRSALRRLCAVPAVALAGGFPLIARAA-DYTLKYGNNLPVTHPLNVRAQEAADRI 59

Query: 61 AAESKGRVDFQVYPNGQLGTDTDMLSQVRXAEV 93
            ES GRVD +++PN QLG DTDML+QVR   +
Sbjct: 60 LKESNGRVDIKIFPNNQLGGDTDMLAQVRSGGI 92