BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0004.p (369 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRV2.1 D8IRV2_HERSS TRAP-type C4-dicarboxylate transport syste... 299 4e-79 E1THZ1.1 E1THZ1_BURSG TRAP C4-dicarboxylate transport system per... 211 1e-52 Q12HJ1.1 Q12HJ1_POLSJ TRAP C4-dicarboxylate transport system per... 179 5e-43 A4YUM3.1 A4YUM3_BRASO Putative TRAP-type C4-dicarboxylate transp... 169 7e-40 Q46QL6.1 Q46QL6_CUPPJ TRAP dicarboxylate transporter, DctM subunit 166 6e-39 >D8IRV2.1 D8IRV2_HERSS TRAP-type C4-dicarboxylate transport system, dctQ-M fusion permease, large permease component protein Length = 627 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 162/214 (75%), Positives = 183/214 (85%), Gaps = 4/214 (1%) Query: 1 MDAAMTEVRLPSASAPTNPLARLLAGVNRGVMHVVAAVAAALVVVETGVLLAGVIYRYAL 60 M+AAMT A NP+AR L +NR VMH+V AVAAALV+ ET VLL GVIYRYAL Sbjct: 2 MEAAMTY----RAPVNMNPVARALVALNRMVMHLVGAVAAALVLAETVVLLTGVIYRYAL 57 Query: 61 HDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAIVNKLSDKWRVWLETVAALIVCI 120 HDPL+WSDELAS LFIWLSMLGAVLALDRGEHMRLTAI+NK S+K R+WLETVAAL+VCI Sbjct: 58 HDPLVWSDELASILFIWLSMLGAVLALDRGEHMRLTAIINKCSEKGRIWLETVAALVVCI 117 Query: 121 FVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVGAILMFLAAIARMASRSSVRQVL 180 FVLM+IHPAVDHA EQM ITTPALEIPDGLRAAALPVGAILM LAA++RMA+ +++R +L Sbjct: 118 FVLMVIHPAVDHAVEQMPITTPALEIPDGLRAAALPVGAILMLLAAVSRMAAMTTMRLLL 177 Query: 181 SAVAVVAVIGAVLWICKPALLAMGNYNLIVFFVV 214 SA+AVVAVIG LW+ KP LL MGNYNLIVFFV+ Sbjct: 178 SALAVVAVIGGALWLAKPMLLGMGNYNLIVFFVL 211 >E1THZ1.1 E1THZ1_BURSG TRAP C4-dicarboxylate transport system permease DctM subunit Length = 626 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/184 (65%), Positives = 141/184 (76%) Query: 31 VMHVVAAVAAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRG 90 VMH V AVAA LVV ET +LL GVI+RY L+ PLIWSDELAS LF WL+MLGAVLAL RG Sbjct: 26 VMHGVGAVAACLVVAETVILLCGVIFRYGLNRPLIWSDELASILFSWLAMLGAVLALHRG 85 Query: 91 EHMRLTAIVNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGL 150 EHMRLTAIV +L DKWR WLE V+AL VC FV +II PAV+H + QM ++TPAL++PDG Sbjct: 86 EHMRLTAIVTRLPDKWRGWLEAVSALTVCAFVGLIIAPAVEHMNLQMPVSTPALQLPDGW 145 Query: 151 RAAALPVGAILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWICKPALLAMGNYNLIV 210 R AALPVGA+LM +AAIAR+A + Q A+ I AVLW +PALL +GN NLIV Sbjct: 146 RCAALPVGAVLMLMAAIARIARNVTPAQFGGALLAAGSIAAVLWFAQPALLGLGNLNLIV 205 Query: 211 FFVV 214 FFVV Sbjct: 206 FFVV 209 >Q12HJ1.1 Q12HJ1_POLSJ TRAP C4-dicarboxylate transport system permease DctM subunit Length = 627 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 134/199 (67%) Query: 16 PTNPLARLLAGVNRGVMHVVAAVAAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLF 75 P N L+ L GV+RG+ VV +AA LV+ E VL AGV+ RY H PL+WSDELAS +F Sbjct: 14 PANALSGLAHGVDRGLGAVVETIAAGLVLAEIIVLFAGVVSRYVFHQPLVWSDELASIMF 73 Query: 76 IWLSMLGAVLALDRGEHMRLTAIVNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASE 135 +WLSMLGAV+AL RGEHMR+TA+VN + R L+TVA F+++++ PA ++A E Sbjct: 74 LWLSMLGAVVALRRGEHMRMTALVNHVQPHTRALLDTVAITASLAFLVLVLFPAGEYAYE 133 Query: 136 QMAITTPALEIPDGLRAAALPVGAILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWI 195 + I TPALEI +G RA+A+PVG LM + A+ R+ SS +Q+ A+A A + W+ Sbjct: 134 ETFIVTPALEISNGWRASAIPVGMGLMIIVALLRLLRISSFQQIALALAGTAAVVLAFWL 193 Query: 196 CKPALLAMGNYNLIVFFVV 214 +P L +G NL++FFV+ Sbjct: 194 AQPLLAPLGKVNLVIFFVL 212 >A4YUM3.1 A4YUM3_BRASO Putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/dctM domains) Length = 628 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/175 (52%), Positives = 123/175 (70%) Query: 39 AAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAI 98 AA LV+ E +L AGV+ RY LH PLIWSDELAS LF+WL+MLGA +A RGEHMR+TA+ Sbjct: 40 AALLVLAEIVILFAGVVARYGLHRPLIWSDELASILFLWLAMLGAAVAFRRGEHMRMTAM 99 Query: 99 VNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVG 158 V + S +R +L+ VA F+LMI P+ ++A E+ ITTPAL+I + RAAALPVG Sbjct: 100 VARASPGFRAYLDLVATTAALAFLLMIALPSWEYAYEESYITTPALQISNICRAAALPVG 159 Query: 159 AILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWICKPALLAMGNYNLIVFFV 213 LM + A+ R+A ++R +L A A VAVI A+ W+ +P L +GN NL++FFV Sbjct: 160 IGLMAMFALMRLARAGNLRTLLLAAATVAVILALFWVAQPMLKPLGNLNLVIFFV 214 >Q46QL6.1 Q46QL6_CUPPJ TRAP dicarboxylate transporter, DctM subunit Length = 634 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 94/184 (51%), Positives = 129/184 (70%), Gaps = 3/184 (1%) Query: 32 MHVVAAVAAALVVV-ETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRG 90 + VV+ V AAL+VV E GVL +GV+ RY LH PL+W DELAS LFIWL MLGA +A RG Sbjct: 36 LGVVSEVPAALLVVAEIGVLFSGVLSRYVLHTPLVWVDELASLLFIWLIMLGAAVAFRRG 95 Query: 91 EHMRLTAIVNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGL 150 HMR+TA+V+ + KWR E VA + +++++ HPA + ASE+ A+T PAL+I + Sbjct: 96 SHMRMTALVDAAAPKWRGVFELVATVAALTWLVLVAHPAYEFASEEAAVTMPALDISNAW 155 Query: 151 RAAALPVGAILMFLAAIARMASRSSVRQVLSA-VAVVAVIGAVLWICKPALLAMGNYNLI 209 RAAALP+G L+ L ++ R+ S SS+R VL A VA V+G ++ + +PAL +GN NL+ Sbjct: 156 RAAALPLGIALILLMSVVRLLSTSSLRMVLVALVACAGVVGGLV-LLQPALQELGNANLL 214 Query: 210 VFFV 213 VFFV Sbjct: 215 VFFV 218