BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0038.p (227 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZ04.1 D8IZ04_HERSS Flagellar basal body L-ring protein 278 3e-73 B9YZ49.1 B9YZ49_9NEIS Flagellar L-ring protein 1 257 1e-66 B2JI05.1 B2JI05_BURP8 Flagellar L-ring protein 1 149 2e-34 E1TB93.1 E1TB93_BURSG Flagellar L-ring protein 1 146 3e-33 B5WPU8.1 B5WPU8_9BURK Flagellar L-ring protein 145 5e-33 >D8IZ04.1 D8IZ04_HERSS Flagellar basal body L-ring protein Length = 221 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/229 (65%), Positives = 190/229 (82%), Gaps = 11/229 (4%) Query: 1 MIQGRIA--CTAYAAGLLCMLSACSSPPPMVQGPTSVRPAYPVANIENNGAIFRVSSAQL 58 +IQ R+A CT L +LSAC+SP PMV GPTSVRPAY VAN+ENNGAIFRVSSAQL Sbjct: 2 LIQTRLAGACT-----LAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQL 56 Query: 59 FEESTTHYVGDILKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGLLASVFNINA 118 FEE T + VGDI+KI+I+ES++ SNK+ T+NSRD+SL Q GPG+G+ + GL +++ N Sbjct: 57 FEEPTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANY 116 Query: 119 TATGSDSFKGSGQTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVV 178 +A+G+++FKGSG + N+N+M+G+LMVSI+EVLPN NLVVAGEKRIG+NG+INTLRFSGVV Sbjct: 117 SASGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176 Query: 179 RARDIRGGNVVSSSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTFW 227 R RDIRGG +V+SSNVADARLEQVGGG++ADA++ G FFR +LT W Sbjct: 177 RTRDIRGG-IVASSNVADARLEQVGGGSIADASTDG---NFFRRLLTIW 221 >B9YZ49.1 B9YZ49_9NEIS Flagellar L-ring protein 1 Length = 227 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/217 (60%), Positives = 158/217 (72%), Gaps = 4/217 (1%) Query: 15 LLCMLSACSS-PPPMVQGPTSVRPAYPVANIEN--NGAIFRVSSAQL-FEESTTHYVGDI 70 L C+L ACSS P V GPT+VRP Y +AN+EN G IFR SA L FE+ + Y+GDI Sbjct: 11 LACLLGACSSVSPTAVSGPTTVRPGYALANLENRNQGGIFRAGSAHLLFEQQSARYIGDI 70 Query: 71 LKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGLLASVFNINATATGSDSFKGSG 130 +KIEIAESL+GSNKS TS SR +LK GPGAGSSM+GLL +F+I+ A+GSDSF G G Sbjct: 71 VKIEIAESLSGSNKSGTSGSRKNALKVAGPGAGSSMTGLLKWIFDIDVDASGSDSFSGKG 130 Query: 131 QTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVVRARDIRGGNVVS 190 + NSN + G L S+I +LPNGNLVVAGEK I +G+ NTLRFSGVV DI+ GN+VS Sbjct: 131 ENTNSNVLKGKLAASVINILPNGNLVVAGEKSIAQHGNSNTLRFSGVVSPNDIKAGNLVS 190 Query: 191 SSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTFW 227 S NVADAR E G G VAD+NS+ WMQQF L+FW Sbjct: 191 SDNVADARFELGGRGLVADSNSRSWMQQFLVDTLSFW 227 >B2JI05.1 B2JI05_BURP8 Flagellar L-ring protein 1 Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 13/202 (6%) Query: 26 PPMVQGPTSVRPAYPVANIENNGAIFRV-SSAQLFEESTTHYVGDILKIEIAESLTGSNK 84 PP+ P N+ G+I++ S L+E ++GD+L I ++ES TGSN Sbjct: 39 PPLASAPI---------NVNTQGSIYQAGQSLLLYETPRAQHIGDVLTIRLSESYTGSNS 89 Query: 85 STTSNSRDTSLKQVGPGAGSSMSGLLASVFNINATATGSDSFKGSGQTDNSNSMTGSLMV 144 + SR + + + + LA +FNI + +T +FKG G +++ MTG+L V Sbjct: 90 ANAQASRASDITAEAADKSTGTAARLARLFNIGSAST---TFKGQGSIADTSGMTGTLAV 146 Query: 145 SIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVVRARDIRGGNVVSSSNVADARLEQVGG 204 ++I +P GNLVV+GEK I M G+ + LR SG+V +DI GN V+SS VA+AR+EQ G Sbjct: 147 TVIGTMPTGNLVVSGEKLISMGGNRDRLRLSGIVNPKDIETGNYVASSKVANARIEQAGQ 206 Query: 205 GTVADANSQGWMQQFFRSVLTF 226 G +AD+ + GW+Q+ F SVLTF Sbjct: 207 GMLADSTTLGWLQRMFMSVLTF 228 >E1TB93.1 E1TB93_BURSG Flagellar L-ring protein 1 Length = 222 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 137/237 (57%), Gaps = 26/237 (10%) Query: 1 MIQGRIACTAYAAGLLCMLSACSS----------PPPMVQGPTSVRPAYPVANIENNGAI 50 M+ R++ AA +L SAC+S PP+V P N+ GAI Sbjct: 1 MLTLRVSVALCAAAVL---SACASGERSIVETPMAPPLVSAPL---------NVNTQGAI 48 Query: 51 FRVSSAQ-LFEESTTHYVGDILKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGL 109 ++ + L+E ++GD+L I ++ES +G+N ST + SR +S+ + + Sbjct: 49 YQAGTLMVLYETPRAQHIGDVLTIRLSESYSGNNSSTAAASRASSITADAADKSTGAAAR 108 Query: 110 LASVFNINATATGSDSFKGSGQTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSI 169 LA +FNI + +T FKG G + + MTG+L V++I +P GNL+V+GEK I M+G+ Sbjct: 109 LARLFNIGSAST---DFKGQGSLTDVSGMTGTLAVTVIGTMPTGNLIVSGEKVISMSGNR 165 Query: 170 NTLRFSGVVRARDIRGGNVVSSSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTF 226 + LR SGVV +DI GN V+SS VA+AR+EQ G G ++DA + GW+Q+ F SVLTF Sbjct: 166 DRLRLSGVVNPKDIEAGNYVASSKVANARIEQAGTGMISDATTMGWLQKMFLSVLTF 222 >B5WPU8.1 B5WPU8_9BURK Flagellar L-ring protein Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 7/219 (3%) Query: 12 AAGLLCMLSACSSPPP---MVQGPTSVRPAYPVANIENNGAIFRVSSAQL-FEESTTHYV 67 A G L+ACSS +V+ P + A N+ GAI++ + L +E ++ Sbjct: 9 ALGAASCLAACSSTQQTRSIVETPMAPPLASAPLNVNTQGAIYQAGAPLLVYETPRAQHI 68 Query: 68 GDILKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGLLASVFNINATATGSDSFK 127 GD+L I +AES +G+N + S SR +S+ +S + LA +FNI T S +K Sbjct: 69 GDVLTIRLAESYSGNNTANASASRASSITATAADQSTSAAARLAKLFNI---GTASTDYK 125 Query: 128 GSGQTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVVRARDIRGGN 187 G G + + MTG+L V++I + GNLVV+GEK I M+G+ + LR SG+V +DI GN Sbjct: 126 GQGNLSDISDMTGTLAVTVIGTVSGGNLVVSGEKIISMSGNKDRLRLSGIVNPKDIEAGN 185 Query: 188 VVSSSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTF 226 VSSS VA+AR+EQ G G V DA + GW+Q+ F SVLTF Sbjct: 186 YVSSSKVANARIEQAGIGMVNDATTMGWLQRMFLSVLTF 224