BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0081.p (244 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX0.1 D8ISX0_HERSS RNA polymerase sigma factor 440 e-122 A6SZS6.1 A6SZS6_JANMA RNA polymerase sigma factor 399 e-109 A4G4Q0.2 A4G4Q0_HERAR RNA polymerase sigma factor 392 e-107 F1VXQ3.1 F1VXQ3_9BURK RNA polymerase sigma factor for flagellar ... 392 e-107 D7DJ43.1 D7DJ43_METS0 RNA polymerase sigma factor 362 2e-98 >D8ISX0.1 D8ISX0_HERSS RNA polymerase sigma factor Length = 244 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/244 (84%), Positives = 227/244 (93%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MYNVKGK KNDLL+ HA LVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAVNRYEETH Sbjct: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQN RK+EEA+ LLQQLGR P+EAE+A Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 +++SL +YQ +L+ECGGHQLIYYEDFHD DGGHEHFLDR+QT D+DDPLQNLINGGFR+A Sbjct: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 V+DSIKALPERE+ILM LYYEQEMNLKEIGAVMGVSESRVCQLHSQAI+RMRS LRE +W Sbjct: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 Query: 241 TGVA 244 +GVA Sbjct: 241 SGVA 244 >A6SZS6.1 A6SZS6_JANMA RNA polymerase sigma factor Length = 243 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/244 (79%), Positives = 219/244 (89%), Gaps = 1/244 (0%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY GK+ KN L+ HA LVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAV+RYEETH Sbjct: 1 MYTAAGKSDKNHLVGEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVSRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RKIE A++ L Q+LGRPP E+EVA Q Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNTLQQRLGRPPNESEVAKQ 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 LKLSL +YQD+L++ GGHQL+YYEDFHD++ +EHFLDRY T ++ DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRAA 179 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI++I+ALPEREKILMGLYYEQEMNLKEIGAVMGV+ESRV QLHSQAIARMR+ LRE+AW Sbjct: 180 VIEAIQALPEREKILMGLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 TGVA 244 TGVA Sbjct: 240 TGVA 243 >A4G4Q0.2 A4G4Q0_HERAR RNA polymerase sigma factor Length = 243 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/244 (77%), Positives = 216/244 (88%), Gaps = 1/244 (0%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY G++ ++ L+ HA LVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAV RYEETH Sbjct: 1 MYTAAGRSDRDHLVSEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVGRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RKIE A++ L Q+LGRPP E+EVA Q Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNSLQQKLGRPPNESEVAKQ 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 LKLSL +YQD+L++ GGHQL+YYEDFHD++ +EHFLDRY T ++ DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRSA 179 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI +I+ALPEREKILM LYYEQEMNLKEIGAVMGV+ESRV QLHSQAIARMR+ LRE+AW Sbjct: 180 VIAAIEALPEREKILMSLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 TGVA 244 TGVA Sbjct: 240 TGVA 243 >F1VXQ3.1 F1VXQ3_9BURK RNA polymerase sigma factor for flagellar operon Length = 244 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/244 (77%), Positives = 213/244 (87%) Query: 1 MYNVKGKTAKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEETH 60 MY GK+ KN LL HA LVK+LAHQMKAKLPPSVEVDDLIQAGMIGL DA+NRYE+TH Sbjct: 1 MYTPSGKSDKNHLLVQHAPLVKRLAHQMKAKLPPSVEVDDLIQAGMIGLFDAINRYEDTH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVATQ 120 GAQFETYAVQRIRG+MLDELRSSDWLPRS+RQN RKIE A+ L Q+LGR P EAEVA Sbjct: 61 GAQFETYAVQRIRGSMLDELRSSDWLPRSMRQNMRKIEVAMQALQQKLGRAPLEAEVAKH 120 Query: 121 LKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRDA 180 +KLSL EYQ++L E GGHQL+YYEDFHD+ G+EHFLDRY T +D+PLQ+L+N GFRDA Sbjct: 121 MKLSLAEYQNLLGEGGGHQLVYYEDFHDSSEGNEHFLDRYCTDLSDNPLQSLLNAGFRDA 180 Query: 181 VIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQAW 240 VI +I+ALPEREKILMGLYYEQEMNLKEIGAV+GV+ESR+ QLHSQAIARMR+ LRE+ W Sbjct: 181 VIRAIEALPEREKILMGLYYEQEMNLKEIGAVLGVTESRISQLHSQAIARMRAFLREKTW 240 Query: 241 TGVA 244 TGVA Sbjct: 241 TGVA 244 >D7DJ43.1 D7DJ43_METS0 RNA polymerase sigma factor Length = 244 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/244 (69%), Positives = 208/244 (85%), Gaps = 2/244 (0%) Query: 1 MYNVKGKT-AKNDLLQLHAALVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVNRYEET 59 MY + GK K++LL HA LVKKLA+Q+KAKLPPSVE+DDLIQAGM+GLLDA+NRYE+T Sbjct: 1 MYTIHGKKDQKDELLNKHAVLVKKLAYQLKAKLPPSVELDDLIQAGMMGLLDAINRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNTRKIEEAIHVLLQQLGRPPQEAEVAT 119 HGAQFETYA QRIRG+MLDELRS+DWLPRS+R++ R +E AI L QQLG+PP E EVA Sbjct: 61 HGAQFETYAAQRIRGSMLDELRSADWLPRSVRKSMRDVEIAISQLEQQLGKPPTENEVAK 120 Query: 120 QLKLSLPEYQDMLTECGGHQLIYYEDFHDADGGHEHFLDRYQTRDTDDPLQNLINGGFRD 179 +L+LSL +Y DML +C GHQLIYYEDFH+++ G EHFLDR+ T DP+++L+ G FR+ Sbjct: 121 KLQLSLSDYYDMLGDCSGHQLIYYEDFHESENG-EHFLDRFNADTTGDPIKSLLEGDFRE 179 Query: 180 AVIDSIKALPEREKILMGLYYEQEMNLKEIGAVMGVSESRVCQLHSQAIARMRSTLREQA 239 A++ +I ALPEREKILMGLYYEQE+NLKEIGAVM VSESRVCQLHSQA+AR+RS L+E++ Sbjct: 180 ALVGAITALPEREKILMGLYYEQELNLKEIGAVMNVSESRVCQLHSQAVARLRSNLKEKS 239 Query: 240 WTGV 243 WTG Sbjct: 240 WTGA 243