BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0080.p (248 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1GZX1.1 Q1GZX1_METFK MotA/TolQ/ExbB proton channel 314 5e-84 A4G4Q1.2 A4G4Q1_HERAR Motility protein A 305 5e-81 D7DJ44.1 D7DJ44_METS0 MotA/TolQ/ExbB proton channel 296 1e-78 F1VXQ2.1 F1VXQ2_9BURK Flagellar motor rotation protein MotA 293 2e-77 E4QKN8.1 E4QKN8_METS6 MotA/TolQ/ExbB proton channel 290 9e-77 >Q1GZX1.1 Q1GZX1_METFK MotA/TolQ/ExbB proton channel Length = 246 Score = 314 bits (805), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 152/245 (62%), Positives = 185/245 (75%) Query: 1 VDWSSVGGLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGV 60 +DWSS+GG+LLAL GIL+G LEGG S++QP AF+IV GTIGAVLLQTR F+ G+ Sbjct: 1 MDWSSLGGILLALAGILIGQALEGGKFSSLIQPAAFMIVLFGTIGAVLLQTRPVFFIQGI 60 Query: 61 KLLSWVFSPPVHNHRKLIDNITVWSGISRREGLLHLEEHMNDSSDPFVKKGLRLLIDGIT 120 +LL WV PP + KL IT WS I+R++G+L LE HM DPFVK LRL+IDG Sbjct: 61 RLLQWVVFPPQDDREKLARRITSWSQIARKDGILLLENHMYSEQDPFVKTALRLVIDGTP 120 Query: 121 PAKLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLIHVMENLSDPAKLGG 180 P K+ DI VD YE QR A+KIWEAAGGY+PTIGILGAVLGLIHVMENLSDP KLG Sbjct: 121 PEKIRDICNVDINRYEAAQRNAVKIWEAAGGYAPTIGILGAVLGLIHVMENLSDPGKLGS 180 Query: 181 GIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSLFGIASGDNPRVIQER 240 GIA+AFVATIYGVG ANL FLP+ANKLK L+ ++ RR+MV + + GIA+G+N ++I+ER Sbjct: 181 GIAIAFVATIYGVGFANLLFLPIANKLKALVQLQTTRREMVVEGVVGIANGENHKIIEER 240 Query: 241 AESYF 245 +Y Sbjct: 241 LNAYL 245 >A4G4Q1.2 A4G4Q1_HERAR Motility protein A Length = 246 Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 148/246 (60%), Positives = 195/246 (79%) Query: 1 VDWSSVGGLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGV 60 +DW S+ G++LALGGIL G +LEGG LGS++QP AF+IV GTIGAVLLQ+ NF +G+ Sbjct: 1 MDWGSLIGIVLALGGILAGQMLEGGKLGSLVQPAAFIIVIVGTIGAVLLQSGWRNFANGL 60 Query: 61 KLLSWVFSPPVHNHRKLIDNITVWSGISRREGLLHLEEHMNDSSDPFVKKGLRLLIDGIT 120 K+ VF P N+ L+ ++T WS ++RREGLL LE + D +DPFV GLRL++DG+ Sbjct: 61 KMAGRVFVPQDDNYASLMHDVTNWSTVARREGLLSLERMIKDVNDPFVAHGLRLIVDGVD 120 Query: 121 PAKLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLIHVMENLSDPAKLGG 180 P KL ++L+++ AYET+QR ++KIWEAAGGY+PTIGILGAVLGLIHVMENLSDP++LG Sbjct: 121 PHKLREVLDMEIGAYETQQRLSIKIWEAAGGYAPTIGILGAVLGLIHVMENLSDPSRLGS 180 Query: 181 GIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSLFGIASGDNPRVIQER 240 GIAVAFVATIYGVG ANL FLP+++KLK ++ +V R +M+AD+ GIA+GDNPR+I+ER Sbjct: 181 GIAVAFVATIYGVGFANLVFLPISSKLKAIVNRDVFRHEMLADAFAGIAAGDNPRLIEER 240 Query: 241 AESYFV 246 Y + Sbjct: 241 MNIYLM 246 >D7DJ44.1 D7DJ44_METS0 MotA/TolQ/ExbB proton channel Length = 246 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 139/245 (56%), Positives = 189/245 (77%) Query: 1 VDWSSVGGLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGV 60 +DWSS+GGL+LAL GILLG +EGG + S++QP A LIV GT GAVLLQ+ +F+ G+ Sbjct: 1 MDWSSLGGLVLALIGILLGQAIEGGQISSLIQPAALLIVMCGTFGAVLLQSNTASFIAGL 60 Query: 61 KLLSWVFSPPVHNHRKLIDNITVWSGISRREGLLHLEEHMNDSSDPFVKKGLRLLIDGIT 120 K++ VFSPP+ + + L + I +WS +R+EG+ LE ++ +DPF++KGL+L+IDG Sbjct: 61 KMVRQVFSPPLDDRQALANRIILWSNFARKEGIFMLETYLKKETDPFIQKGLKLMIDGTP 120 Query: 121 PAKLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLIHVMENLSDPAKLGG 180 P K+ ++ +D +E ++R A KIW AAGGY+PT+GILGAVLGLIHVMENLSDP++LG Sbjct: 121 PEKIRQVIAIDMHFFEIQERNAAKIWSAAGGYAPTVGILGAVLGLIHVMENLSDPSRLGS 180 Query: 181 GIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSLFGIASGDNPRVIQER 240 GIAVAFVATIYGVGLANL FLPV+NKLK L+ E+ RR+M+ ++ IASGD+PRV++ER Sbjct: 181 GIAVAFVATIYGVGLANLVFLPVSNKLKSLIQHEMMRREMLLNAWVSIASGDHPRVVEER 240 Query: 241 AESYF 245 +Y Sbjct: 241 LLAYL 245 >F1VXQ2.1 F1VXQ2_9BURK Flagellar motor rotation protein MotA Length = 246 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/244 (60%), Positives = 185/244 (75%) Query: 1 VDWSSVGGLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGV 60 +DW SV GL+LAL GIL+G LLEGG LGS++QPTAF+IV GT GAVLLQ+ GV Sbjct: 1 MDWGSVAGLVLALLGILVGQLLEGGRLGSLVQPTAFVIVMVGTFGAVLLQSGWPTVKRGV 60 Query: 61 KLLSWVFSPPVHNHRKLIDNITVWSGISRREGLLHLEEHMNDSSDPFVKKGLRLLIDGIT 120 ++ + F HR ++ +WS +RREGLL LE M++S DPF+ KGLRLL DGI Sbjct: 61 RMAAAAFRNQPDLHRLHAADVAMWSQTARREGLLSLERFMDNSDDPFITKGLRLLTDGID 120 Query: 121 PAKLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLIHVMENLSDPAKLGG 180 P KL +IL ++ ++YETR+R+A +IW+AAGGY+PTIGILGAVLGLIHVMENLSDP++LG Sbjct: 121 PYKLREILGIEISSYETRERKAARIWDAAGGYAPTIGILGAVLGLIHVMENLSDPSRLGA 180 Query: 181 GIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSLFGIASGDNPRVIQER 240 GIAVAFVATIYGVGLANL FLP+ KLK + EV R +M+AD+ IASGDNP I+ER Sbjct: 181 GIAVAFVATIYGVGLANLVFLPIGGKLKTAVNDEVTRLEMLADAFCCIASGDNPISIEER 240 Query: 241 AESY 244 ++Y Sbjct: 241 MKAY 244 >E4QKN8.1 E4QKN8_METS6 MotA/TolQ/ExbB proton channel Length = 246 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 141/245 (57%), Positives = 184/245 (75%) Query: 1 VDWSSVGGLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGV 60 +DW S+GG+LLA+ GILLG +EGG + S++QP AFLIV GT GAVLLQ++ NF G+ Sbjct: 1 MDWGSLGGILLAIFGILLGQAIEGGKVASLIQPAAFLIVVFGTFGAVLLQSKPANFKLGI 60 Query: 61 KLLSWVFSPPVHNHRKLIDNITVWSGISRREGLLHLEEHMNDSSDPFVKKGLRLLIDGIT 120 LL W+ PPV + ++L I WS +RR+GLL LE + + +DPF+KKGLRLLIDGI Sbjct: 61 MLLRWIVQPPVDDRKELSRRIIGWSHTARRDGLLKLEAQLYNETDPFIKKGLRLLIDGIA 120 Query: 121 PAKLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLIHVMENLSDPAKLGG 180 K+ +I +D YE++ R A KIW++AGGY+PTIGILGAVLGLIHVMENLSDP++LG Sbjct: 121 ADKIREICAIDIYYYESQYRSAAKIWDSAGGYAPTIGILGAVLGLIHVMENLSDPSRLGS 180 Query: 181 GIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSLFGIASGDNPRVIQER 240 GIAVAFVATIYGVGLAN+ FLP+ +KLK + E +RR+M+ ++ IA GD+ RV++ER Sbjct: 181 GIAVAFVATIYGVGLANIVFLPIGSKLKAYVLQEASRREMLMNAWVSIAQGDHTRVVEER 240 Query: 241 AESYF 245 SY Sbjct: 241 LNSYM 245