BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0076.p (240 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX3.1 D8ISX3_HERSS Flagellar basal body P-ring formation protein 301 4e-80 A6SXW0.1 A6SXW0_JANMA Flagellar basal body P-ring biosynthesis p... 265 6e-69 A4G6B5.1 A4G6B5_HERAR Flagella basal body P-ring formation prote... 259 3e-67 F1VUE1.1 F1VUE1_9BURK Flagellar basal-body P-ring formation prot... 256 2e-66 Q2Y9F0.1 Q2Y9F0_NITMU Flagellar protein FlgA 213 2e-53 >D8ISX3.1 D8ISX3_HERSS Flagellar basal body P-ring formation protein Length = 254 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 172/209 (82%) Query: 32 PPRQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGR 91 P RQDL +Q+ AEQF+K QT GL G++ I +P D R+ L AC PQAFMPNG RLWGR Sbjct: 46 PQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGR 105 Query: 92 TTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGII 151 T++GVKC+AP+PWTIY+RA VQVI++Y++ A PLAQGQ I +DI++V+GD+S LP G+I Sbjct: 106 TSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVI 165 Query: 152 TDSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGS 211 T+ SQ IGR A +SL G P+R DA+R+ RVVQQGQ+VRVVS GPGFQI+TEARAL+N + Sbjct: 166 TEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNAN 225 Query: 212 EGQMVQAKTSAGQVVSGIAKAGGILEINY 240 EGQM QA+T+AGQVVSGIAKAGGILEINY Sbjct: 226 EGQMTQARTAAGQVVSGIAKAGGILEINY 254 >A6SXW0.1 A6SXW0_JANMA Flagellar basal body P-ring biosynthesis protein Length = 234 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 124/208 (59%), Positives = 160/208 (76%) Query: 33 PRQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGRT 92 PRQDL L++ AEQF+++Q GL G V + V D RL L C P+AF+P + WG+T Sbjct: 27 PRQDLAVLKQTAEQFLQMQANGLPGEVKVTVGAIDPRLKLPVCPVPEAFLPPSSKAWGKT 86 Query: 93 TIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGIIT 152 T+GV+C P+ WTIY+ A V+V EYI AAPLAQGQ IGP DI KVKGDL+NLP+G+IT Sbjct: 87 TVGVRCNVPTVWTIYVSAQVRVHGEYIAAAAPLAQGQNIGPGDIAKVKGDLTNLPSGVIT 146 Query: 153 DSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGSE 212 D+SQAIGRTA ++ALGAP+RQDALR+ + +QQGQAVRV+ G GF +++EARAL N +E Sbjct: 147 DASQAIGRTAATTIALGAPLRQDALRNQQAIQQGQAVRVILNGDGFSVSSEARALNNANE 206 Query: 213 GQMVQAKTSAGQVVSGIAKAGGILEINY 240 GQ+ Q +T+AGQV+SGIAK GGI+E+ Y Sbjct: 207 GQLTQVRTAAGQVISGIAKLGGIVELAY 234 >A4G6B5.1 A4G6B5_HERAR Flagella basal body P-ring formation protein FlgA Length = 235 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/229 (54%), Positives = 165/229 (72%), Gaps = 1/229 (0%) Query: 13 LLLPAFGLSALAQTTEQNTPP-RQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPADSRLN 71 ++ A LSA + P RQDLG L++ AEQF++ Q GL G V + + D R Sbjct: 7 FVIAALALSAQCAVAQGVEPEARQDLGVLKQTAEQFLRAQAAGLPGEVRVTMGSIDPRTK 66 Query: 72 LAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQII 131 L AC +P+AF+P + WG+T++G++C APS WTIY++A VQV EYI AAPL+QGQ I Sbjct: 67 LPACVAPEAFLPASSKAWGKTSVGLRCSAPSRWTIYVQAKVQVHGEYIAAAAPLSQGQTI 126 Query: 132 GPNDITKVKGDLSNLPNGIITDSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRV 191 G DI +KGDL+ LP G+ITD+SQAIGRTA ++ALGAP+RQDALR+ + +QQGQAVRV Sbjct: 127 GQGDIATLKGDLTTLPAGVITDASQAIGRTAATTVALGAPLRQDALRNQQAIQQGQAVRV 186 Query: 192 VSTGPGFQITTEARALTNGSEGQMVQAKTSAGQVVSGIAKAGGILEINY 240 V G GF +++EARAL N +EGQ+ Q +T AGQV+SGIAK GGI+E+ Y Sbjct: 187 VVNGAGFSVSSEARALNNANEGQLTQVRTPAGQVISGIAKLGGIVELTY 235 >F1VUE1.1 F1VUE1_9BURK Flagellar basal-body P-ring formation protein flgA Length = 245 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 176/234 (75%), Gaps = 9/234 (3%) Query: 7 VLLSLLLLLPAFGLSALAQTTEQNTPPRQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPA 66 V L+ LL LPA T Q PRQD ++ E+F++ Q+ G G V I V Sbjct: 21 VALACLLSLPA---------TAQIMAPRQDPATIRTTVERFLRAQSAGSPGDVTITVGQL 71 Query: 67 DSRLNLAACTSPQAFMPNGGRLWGRTTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLA 126 D+R+NL AC P+AF+P G R+WG+T++GV+C+APSPWT+Y+ A V+VIAEY+ +AAPLA Sbjct: 72 DARMNLPACPVPEAFLPAGSRVWGKTSVGVRCLAPSPWTVYVTAQVKVIAEYVASAAPLA 131 Query: 127 QGQIIGPNDITKVKGDLSNLPNGIITDSSQAIGRTANISLALGAPIRQDALRSNRVVQQG 186 QGQ++GPND+ +++GDL+ LP GI+TD +QAIGRT +SL +G+P+R DALR +VVQQG Sbjct: 132 QGQLVGPNDVIRMRGDLTVLPAGILTDPAQAIGRTMAMSLGMGSPLRTDALRIQQVVQQG 191 Query: 187 QAVRVVSTGPGFQITTEARALTNGSEGQMVQAKTSAGQVVSGIAKAGGILEINY 240 QAVR+VS+GPGF + TE RAL N +EGQ+ QA+T+AGQVVSG+A+AGG +++ Y Sbjct: 192 QAVRLVSSGPGFSVATEGRALNNAAEGQIAQARTAAGQVVSGVARAGGYVDVTY 245 >Q2Y9F0.1 Q2Y9F0_NITMU Flagellar protein FlgA Length = 248 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/207 (50%), Positives = 145/207 (70%) Query: 34 RQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGRTT 93 RQD A+Q+ F+++Q+ GL G V I D RL L ACT+ + +P G R WG TT Sbjct: 42 RQDPHAVQQAVLSFLQMQSIGLPGEVEITSGTIDGRLALPACTALEPSLPPGTRPWGNTT 101 Query: 94 IGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGIITD 153 + V+C AP WTIY+RATV+V+AEY+V+ PL QGQ+I +D+T KGDL+ LP GI+TD Sbjct: 102 VMVRCTAPHSWTIYVRATVKVVAEYLVSTRPLRQGQVIDASDLTSRKGDLTQLPPGIVTD 161 Query: 154 SSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGSEG 213 +QAIGRT +L G+P+RQD LR+ V Q Q V++VS+G GF ++ E +ALT+ +EG Sbjct: 162 WNQAIGRTLGGNLPFGSPLRQDMLRAQTAVIQNQTVKLVSSGRGFSVSAEGKALTHATEG 221 Query: 214 QMVQAKTSAGQVVSGIAKAGGILEINY 240 Q V ++++G VVSGIA+AG I+E+ Y Sbjct: 222 QPVTVRSASGAVVSGIARAGAIVEVTY 248