BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0071.p (256 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX8.1 D8ISX8_HERSS Flagellar basal body rod FlgF protein 396 e-108 D7DJ54.1 D7DJ54_METS0 Flagellar basal-body rod protein FlgF 321 6e-86 A4G6B0.1 A4G6B0_HERAR Flagellar basal-body rod protein FlgF (Put... 318 7e-85 C6WVA6.1 C6WVA6_METML Flagellar basal-body rod protein FlgF 316 2e-84 E4QKL6.1 E4QKL6_METS6 Flagellar basal-body rod protein FlgF 315 4e-84 >D8ISX8.1 D8ISX8_HERSS Flagellar basal body rod FlgF protein Length = 245 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/247 (78%), Positives = 223/247 (90%), Gaps = 2/247 (0%) Query: 10 MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69 MDR++YTAMSGAKHT+EQQATASNNLANATTTGFR+QL+TFRA PVVG +GL TRTFVVD Sbjct: 1 MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVG-DGLPTRTFVVD 59 Query: 70 STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129 STAG +F+ GPIQDTGRALDVA+ G GWIAVQTADGGEAYTRNGSFK++ENGILQTQ+G Sbjct: 60 STAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQ 119 Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189 +V+GDGGPI+IPPD T+AIA DGTVS+IPT G PNAVN+LGRIK+VNPDEK++KRGDDGL Sbjct: 120 TVLGDGGPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGL 179 Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249 FR G A PDANVRL GALEGSNVNVV++MVNMINL+RQF++NMK++ TA+SDA KA Sbjct: 180 FRTITGA-AQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKA 238 Query: 250 NQILSLS 256 ILSLS Sbjct: 239 TSILSLS 245 >D7DJ54.1 D7DJ54_METS0 Flagellar basal-body rod protein FlgF Length = 246 Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 198/246 (80%), Gaps = 1/246 (0%) Query: 10 MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69 MDR+IYTAM+GAKH +EQQAT ++NLAN T+TGF++Q+D+FRAVPV+ EGLATR FVVD Sbjct: 1 MDRMIYTAMTGAKHILEQQATTAHNLANVTSTGFKAQVDSFRAVPVIS-EGLATRAFVVD 59 Query: 70 STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129 ST G +F G IQ T R LDVA+ G GW+++Q ADG E YTRNGS K+SENGILQT TGL Sbjct: 60 STVGADFNPGAIQSTNRDLDVAIQGKGWLSIQRADGSEGYTRNGSLKVSENGILQTATGL 119 Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189 +V+GDGGPISIPPDV +++ DGTVS++ P A N+LGR+K+VNP E L R +DGL Sbjct: 120 TVLGDGGPISIPPDVAVSVGKDGTVSTVANGAKPGASNVLGRLKLVNPPEADLVRAEDGL 179 Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249 F + G A DANV +VGGALE SNVNV+D+MV+MI+LARQF+ MK++ +A+++A+KA Sbjct: 180 FVTSNGNPAEVDANVHVVGGALESSNVNVIDAMVSMISLARQFETQMKLMQSAENNANKA 239 Query: 250 NQILSL 255 +Q+LSL Sbjct: 240 SQLLSL 245 >A4G6B0.1 A4G6B0_HERAR Flagellar basal-body rod protein FlgF (Putative proximal rod protein) Length = 246 Score = 318 bits (814), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 156/247 (63%), Positives = 193/247 (78%), Gaps = 1/247 (0%) Query: 10 MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69 MDR+IYTAM+GAK +EQQAT ++NL+N +TTGFR+QLDTFRAVPVV L TRTFVVD Sbjct: 1 MDRLIYTAMTGAKQILEQQATVTHNLSNVSTTGFRAQLDTFRAVPVVNA-ALPTRTFVVD 59 Query: 70 STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129 ST G +F GP Q TGR LDVA+ G GW+AV+ ADG E YTR+GS K++ENG+LQTQ+GL Sbjct: 60 STVGNDFRAGPFQQTGRDLDVAIQGKGWLAVERADGTEGYTRSGSLKVNENGVLQTQSGL 119 Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189 +V+GDGGPISIPPDV I IA DGT+SS+ + P +GR+K+VNPDE +LKR DDGL Sbjct: 120 NVLGDGGPISIPPDVQITIAKDGTISSVESGSKPGQTIQVGRLKLVNPDEANLKRADDGL 179 Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249 F G DA+V LV GA+EGSNVNVVD+MVNMI LARQF+L+M ++ A+S+A KA Sbjct: 180 FVTKDGEDVAADADVSLVSGAVEGSNVNVVDAMVNMITLARQFELHMNMLKHAESNAAKA 239 Query: 250 NQILSLS 256 + L+LS Sbjct: 240 TEFLALS 246 >C6WVA6.1 C6WVA6_METML Flagellar basal-body rod protein FlgF Length = 246 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 154/247 (62%), Positives = 196/247 (79%), Gaps = 1/247 (0%) Query: 10 MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69 MDR+IYTAM+GAKH +E+QAT S+NLANAT+TGF+SQ+D+FRAVPV+ GL TR FVVD Sbjct: 1 MDRMIYTAMTGAKHILEKQATTSHNLANATSTGFKSQIDSFRAVPVLS-TGLPTRAFVVD 59 Query: 70 STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129 ST+G++F G IQ T R LD+AV GDGW+AVQ ADG EAYTRNGS K S NG+LQT GL Sbjct: 60 STSGSDFNSGAIQSTNRNLDIAVKGDGWLAVQRADGSEAYTRNGSLKTSPNGLLQTANGL 119 Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189 ++MGDGGPI+IPPDV ++I DGTVS++ + P NI+GRIK+VNP + +L R DDGL Sbjct: 120 TIMGDGGPITIPPDVAVSIGKDGTVSTVNNLTLPGPSNIIGRIKLVNPPQANLVRADDGL 179 Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249 F G A DANV +V GALE SNVNVVD+MV MI+L+RQF+ MK++ TA+++A+KA Sbjct: 180 FTTKDGNPATADANVSVVQGALESSNVNVVDAMVTMISLSRQFETQMKLIQTAENNANKA 239 Query: 250 NQILSLS 256 +Q+L L+ Sbjct: 240 SQLLQLT 246 >E4QKL6.1 E4QKL6_METS6 Flagellar basal-body rod protein FlgF Length = 246 Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 195/246 (79%), Gaps = 1/246 (0%) Query: 10 MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69 MDR+IYTAMSGAKH +EQQAT ++NLANAT+TGF++Q+D+FRAVP+V EGL TR FV+D Sbjct: 1 MDRMIYTAMSGAKHILEQQATTAHNLANATSTGFKAQVDSFRAVPIVS-EGLPTRAFVID 59 Query: 70 STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129 +T T+F G I T R LD+A+ G GWIAVQ DG EAYTRNGS K++ENGILQT GL Sbjct: 60 TTVATDFTPGTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADGL 119 Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189 +V+GDGGPI+IPPD IAI DGTVS++ + P+ NI+GRIK+VNPDE +L RG DGL Sbjct: 120 TVLGDGGPITIPPDERIAIGKDGTVSTVSRVTVPSPTNIVGRIKLVNPDESTLVRGTDGL 179 Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249 F G A DAN+++ GALEGSNVNVVD+MVNMI+LARQF+ MK++ A+++A+KA Sbjct: 180 FSTQNGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAENNANKA 239 Query: 250 NQILSL 255 +Q+ SL Sbjct: 240 SQLFSL 245