BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0063.p (379 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISY4.1 D8ISY4_HERSS Flagellar hook-filament junction protein, ... 462 e-128 B0RKF4.1 B0RKF4_HERSE N-terminus flagellar protein 462 e-128 Q3SIE8.1 Q3SIE8_THIDA Flagellin, flagellar hook-associated prote... 208 1e-51 Q0AJ46.1 Q0AJ46_NITEC Flagellar hook-associated protein 3 183 3e-44 Q82XG2.1 Q82XG2_NITEU Flagellin, N-terminus 172 6e-41 >D8ISY4.1 D8ISY4_HERSS Flagellar hook-filament junction protein, N-terminus flagellin protein Length = 377 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/379 (63%), Positives = 286/379 (75%), Gaps = 2/379 (0%) Query: 1 MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60 MRIST M+YQ SNN+LTSMQ LKL+QQVT QQ VLLPSDD VAAARALD+ QT LN+ Sbjct: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 Query: 61 QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120 QYKTNR NA+S+LS V L S+T MLTK+KSN+ AGNA+YSN ER NMA+E+KGNL E Sbjct: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180 +LG+ANA D GNYLF+GFK+TTQPF D G +VYNGDQG +LQVDSTR M+IS SGQ Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180 Query: 181 AVFQGAGQDTFKNMQDLITLLQVPVTEAANNADTQAANTFQYPVGSLPAQYPIQAYKTAQ 240 A+FQG GQD FK M + I +L VPVTEAAN AD AAN F YP GS PI AYKT+ Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGS--GLTPIAAYKTSL 238 Query: 241 AALDAAAPTDPNYSTLLTQAANAKLLSDKAEAARTPIPGSQAALTRGLNKLGGAIDLQMN 300 A L+A +PTDP Y + T A KL SD A+AARTP+ GSQAALTR L ID ++ Sbjct: 239 AQLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLS 298 Query: 301 SVGAATASVGARQSEIDNLNAAGDVLKVQYEQSVNDLLGRNPSDLSANISALSLQQTYLQ 360 +V A AS+GARQ+E+DNL+AAG+V K Y Q++N+LLGRNPSD++ IS +L QTYL Sbjct: 299 NVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLS 358 Query: 361 AAQKSFVVTSSLTLLNYLK 379 AAQK FV TS L+LLNYLK Sbjct: 359 AAQKVFVTTSGLSLLNYLK 377 >B0RKF4.1 B0RKF4_HERSE N-terminus flagellar protein Length = 377 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/379 (63%), Positives = 286/379 (75%), Gaps = 2/379 (0%) Query: 1 MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60 MRIST M+YQ SNN+LTSMQ LKL+QQVT QQ VLLPSDD VAAARALD+ QT LN+ Sbjct: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 Query: 61 QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120 QYKTNR NA+S+LS V L S+T MLTK+KSN+ AGNA+YSN ER NMA+E+KGNL E Sbjct: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180 +LG+ANA D GNYLF+GFK+TTQPF D G +VYNGDQG +LQVDSTR M+IS SGQ Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180 Query: 181 AVFQGAGQDTFKNMQDLITLLQVPVTEAANNADTQAANTFQYPVGSLPAQYPIQAYKTAQ 240 A+FQG GQD FK M + I +L VPVTEAAN AD AAN F YP GS PI AYKT+ Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGS--GLTPIAAYKTSL 238 Query: 241 AALDAAAPTDPNYSTLLTQAANAKLLSDKAEAARTPIPGSQAALTRGLNKLGGAIDLQMN 300 A L+A +PTDP Y + T A KL SD A+AARTP+ GSQAALTR L ID ++ Sbjct: 239 AQLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLS 298 Query: 301 SVGAATASVGARQSEIDNLNAAGDVLKVQYEQSVNDLLGRNPSDLSANISALSLQQTYLQ 360 +V A AS+GARQ+E+DNL+AAG+V K Y Q++N+LLGRNPSD++ IS +L QTYL Sbjct: 299 NVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLS 358 Query: 361 AAQKSFVVTSSLTLLNYLK 379 AAQK FV TS L+LLNYLK Sbjct: 359 AAQKVFVTTSGLSLLNYLK 377 >Q3SIE8.1 Q3SIE8_THIDA Flagellin, flagellar hook-associated protein 3 FlgL Length = 300 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 141/206 (68%) Query: 1 MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60 MRIST L++ L+ +Q ++K QQ++ + VL P+DD VAAARAL+++Q+Q++N Sbjct: 1 MRISTQTLFEAGAARLSELQSDMVKTQQQISTGRRVLTPADDPVAAARALEVTQSQSMNS 60 Query: 61 QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120 QY NR+ A SSL+ V +LT VT +L +K+ I AGN + ER MATEL+G ++ Sbjct: 61 QYGVNRDYAKSSLAAVEGSLTGVTELLQDVKTTIVAAGNGTLGDMERGYMATELRGRFEQ 120 Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180 +LG AN+ DA GNYLFSGF+ T PF ++ + YNGD GQ+ +QVD+TR + +S SGQ Sbjct: 121 LLGMANSRDAQGNYLFSGFQTATPPFSKNAGNAVTYNGDAGQRLMQVDTTRQLAVSHSGQ 180 Query: 181 AVFQGAGQDTFKNMQDLITLLQVPVT 206 A+FQG GQD F+ + DLI +L+ P T Sbjct: 181 AIFQGGGQDVFQTLNDLIAVLETPGT 206 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 4/101 (3%) Query: 278 PGSQAALTRGLNKLGGAIDLQMNSVGAATASVGARQSEIDNLNAAGDVLKVQYEQSVNDL 337 PG+ A LT GL G IDL +++V ASVG+R EID L++AG+ +QY + ++ Sbjct: 204 PGT-AGLTAGLETANGKIDLALDNVLTVRASVGSRLQEIDALDSAGEDRHLQYSEILS-- 260 Query: 338 LGRNPSDLSANISALSLQQTYLQAAQKSFVVTSSLTLLNYL 378 G D + ++ LS QQ L+AAQKSFV TS L+L N++ Sbjct: 261 -GLQDLDYTQALTELSKQQLTLEAAQKSFVKTSGLSLFNFI 300 >Q0AJ46.1 Q0AJ46_NITEC Flagellar hook-associated protein 3 Length = 299 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 130/204 (63%) Query: 1 MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60 MR+ST+ LY + Q S+ KL QQ++ + ++ PSDD + AARA +LSQ+ ALN Sbjct: 1 MRVSTNTLYDQGTRSMLQQQSSLFKLQQQLSSGKRIMTPSDDPIGAARAHELSQSLALNT 60 Query: 61 QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120 QY NR A SL QV++ L SV+ ++ +++ AGN AYS+NER MA EL+G+ + Sbjct: 61 QYADNRYRAMDSLQQVDSTLGSVSNVIQSVRTMAVAAGNPAYSDNERQMMAVELRGHFEH 120 Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180 +LG AN D GNYLFSGFK TQPF S G + Y GDQ Q+ +QV +R + +S +G Sbjct: 121 LLGLANTKDEQGNYLFSGFKGNTQPFVEQSAGVVTYQGDQEQRLIQVSGSRQLPVSETGD 180 Query: 181 AVFQGAGQDTFKNMQDLITLLQVP 204 AVF+ GQ+ F+ + + I+ L+ P Sbjct: 181 AVFEPGGQNLFQTVDNFISALKTP 204 >Q82XG2.1 Q82XG2_NITEU Flagellin, N-terminus Length = 299 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 129/204 (63%), Gaps = 1/204 (0%) Query: 1 MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60 MR+STS LY + Q S+ +L Q ++ + ++ PSDD + AARA +L+Q+ +LN Sbjct: 1 MRVSTSTLYDQGTRSMLQQQDSLFRLQQHLSTGKRIMTPSDDPIGAARAHELAQSLSLNT 60 Query: 61 QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120 QY NR A SL QV++ L SV+ ++ +++ GN+A+S++ER MA EL+G+ E Sbjct: 61 QYADNRYRAADSLQQVDSTLGSVSNLIQSVRTMAVAVGNSAFSDSERKMMAVELRGHFDE 120 Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180 +LG AN D GNYLFSGFK T+PF+ + G + Y GDQ Q+ +QV S+R + +S +G Sbjct: 121 LLGLANTKDEQGNYLFSGFKGNTRPFEQTANG-VEYKGDQEQRLIQVSSSRQLPVSETGD 179 Query: 181 AVFQGAGQDTFKNMQDLITLLQVP 204 A+F+ G F+ ++D I L+ P Sbjct: 180 AIFEPGGLSLFQTIEDFIDELETP 203