BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0061.p (218 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISY8.1 D8ISY8_HERSS Flagellar biosynthetic protein fliR 276 2e-72 A6SXX2.1 A6SXX2_JANMA Flagellar biosynthetic protein fliR 242 3e-62 A4G6A3.2 A4G6A3_HERAR Flagellar biosynthetic protein fliR 236 1e-60 F1VUF4.1 F1VUF4_9BURK Flagellar biosynthesis protein FliR 226 1e-57 Q3SIG3.1 Q3SIG3_THIDA Flagellar biosynthetic protein fliR 210 1e-52 >D8ISY8.1 D8ISY8_HERSS Flagellar biosynthetic protein fliR Length = 267 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 148/211 (70%), Positives = 185/211 (87%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60 M+ +S QLY+W+A FIWP TRILGL+A+APPFGSASVPMLVK+LLGV VIAP+VP+ Sbjct: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 Query: 61 PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120 PPA++P SMTG++IL+QQ +IG +MGF++R+VF+AVE AGE TS TMGL FA FFDPQ+Q Sbjct: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180 GRT+ ISQ+FSLLAT+VFL++NGHL+L+ VMA+SF+TLPIT P+T EGFH + L GA+I Sbjct: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAPR 211 FSMGLQLSLP+L+ALLITN ALG+LTRAAP+ Sbjct: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQ 211 >A6SXX2.1 A6SXX2_JANMA Flagellar biosynthetic protein fliR Length = 263 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/211 (57%), Positives = 168/211 (79%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60 MI++TSA+L WIAAF+WPLTRI+G+++VAP FG+ SVP VK+ LG++ +++IAP VP Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120 PALDPMS+ GLLIL QQ IIG ++GF++R+ F+ VEMAGE+ TMGLGFA FFDPQ++ Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180 R+SAISQ +LL +++L+ N HL++++ +A SF LPI+++ ++A G + G RI Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAPR 211 FS G+QLSLP++ ALLITN+ALGILTRAAP+ Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQ 211 >A4G6A3.2 A4G6A3_HERAR Flagellar biosynthetic protein fliR Length = 263 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 129/211 (61%), Positives = 168/211 (79%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60 MI +TSA+L WIA+F+WPLTRILGL++VAP FG+ SVP VK+ LG+M +L+IAP VP Sbjct: 1 MITLTSAELNTWIASFLWPLTRILGLISVAPLFGNVSVPARVKISLGIMLALIIAPTVPA 60 Query: 61 PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120 PA+DPMS GLLILVQQ +IG MGF++R+VF+ VEMAGE+T TMGLGFA FFDPQ++ Sbjct: 61 LPAMDPMSPAGLLILVQQLLIGLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTR 120 Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180 R+SAISQ +LL +++LS N HL++++ +A SF LPI++ V+ EGF + G RI Sbjct: 121 ARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRI 180 Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAPR 211 FS G+QLSLPM+ ALL+TN+ALGILTRAAP+ Sbjct: 181 FSAGVQLSLPMVAALLMTNIALGILTRAAPQ 211 >F1VUF4.1 F1VUF4_9BURK Flagellar biosynthesis protein FliR Length = 258 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/210 (59%), Positives = 164/210 (78%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60 M+N +SA+L I F+WPLTRILGL+AVAP FG+ASVP +K+ LG++ ++++AP V V Sbjct: 1 MLNFSSAELNALITGFLWPLTRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQV 60 Query: 61 PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120 P L+PMSM GLLILVQQ +IG AMGFS+R++FSAVEMAGE+ S TMGLGFA FFDPQS+ Sbjct: 61 PSGLEPMSMQGLLILVQQLLIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSR 120 Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180 GR++A+SQ SL+ +V+L+ N HL L++ + DSF T+PIT P+ + +R+ Sbjct: 121 GRSNAVSQFLSLIVLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRL 180 Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAP 210 FS GLQL+LP++ ALLITN+ALGILTRAAP Sbjct: 181 FSAGLQLALPIVAALLITNVALGILTRAAP 210 >Q3SIG3.1 Q3SIG3_THIDA Flagellar biosynthetic protein fliR Length = 262 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 115/211 (54%), Positives = 157/211 (74%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60 MI++T AQL +W+ +FIWPLTRILGL+ VAP FG +VP VK+ LG+ +L+ AP +P Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120 PA+ S GL ILVQQF+IG A+GF +R+VF+AVE AGE+ MGLGFA FFDPQS Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180 G+T +++ F++LA L+ L++N HLLL+ V+ +SF LPI+ P+ A GF +A G I Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAPR 211 FS+GLQL+LP++ LL+TN+ LGILTR+AP+ Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQ 211