BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0059.p         (268 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ISZ0.1 D8ISZ0_HERSS Flagellar biosynthetic protein FliP protein     372   e-101
F1VUF6.1 F1VUF6_9BURK Flagellar biosynthesis protein fliP             366   2e-99
A6SXX4.1 A6SXX4_JANMA Flip component of flagellar biosynthesis p...   360   1e-97
Q5QCQ6.1 Q5QCQ6_HERAR FliP                                            357   1e-96
A4G6A1.1 A4G6A1_HERAR Flagellar biosynthetic protein FliP             357   1e-96

>D8ISZ0.1 D8ISZ0_HERSS Flagellar biosynthetic protein FliP protein
          Length = 244

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 210/225 (93%)

Query: 44  QQGLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALG 103
           QQG+PA  S PAPGGG  Y+L IQTMLLLTSLSF+PAALLMMTCFTRIVIVLSLLRQALG
Sbjct: 20  QQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALG 79

Query: 104 TQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAPLKEFML 163
           TQSTPPTQVLVGLSLFLT FVM PVFD+IY DAYQPFA+NKI M++A++KGA PLKEFML
Sbjct: 80  TQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFML 139

Query: 164 KQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPFLIIDMV 223
           KQTR+SDLALYVKLS  P LQGPEDVPLRLL+PAF+TSELKTAFQI FAIF+PFLIIDMV
Sbjct: 140 KQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMV 199

Query: 224 VASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268
           VASILMSMGMMMMSPA+VSLPFKLMLFVLVDGWQLLIGSLA+SFY
Sbjct: 200 VASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 244


>F1VUF6.1 F1VUF6_9BURK Flagellar biosynthesis protein fliP
          Length = 251

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/246 (80%), Positives = 221/246 (89%), Gaps = 1/246 (0%)

Query: 24  SRWLRLLPVFLLCLPLAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAAL 82
           S  LR   V L+ LPLAA AQQ GLPA TSTP  GGGQ Y LS+QT+LLLT+LSF+PAAL
Sbjct: 6   STCLRWSAVALVVLPLAAYAQQAGLPALTSTPTAGGGQNYTLSLQTLLLLTALSFLPAAL 65

Query: 83  LMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFAD 142
           LMMT FTRI+IVLSLLRQALGTQS PP QV+VGL+LFLTLFVMGPVFDKIY DAY P  +
Sbjct: 66  LMMTSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYLPLQE 125

Query: 143 NKISMIDAMEKGAAPLKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSE 202
           NKI+M  AME+GAAPLK FM+KQTRQ+DLALYVK+S+SP LQGP+DVPLR+L+PAFITSE
Sbjct: 126 NKINMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSPALQGPDDVPLRILVPAFITSE 185

Query: 203 LKTAFQISFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGS 262
           LKTAFQISFAIFIPFLIIDMVVAS+LMSMGMMM+SP+IVSLPFKLMLFVLVDGWQLLIGS
Sbjct: 186 LKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVDGWQLLIGS 245

Query: 263 LAESFY 268
           LA+SFY
Sbjct: 246 LAQSFY 251


>A6SXX4.1 A6SXX4_JANMA Flip component of flagellar biosynthesis pathway
          Length = 252

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/231 (82%), Positives = 215/231 (93%), Gaps = 1/231 (0%)

Query: 39  LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97
           +AA AQQ GLPAFTS+PAPGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL
Sbjct: 22  VAAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81

Query: 98  LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157
           LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K  AP
Sbjct: 82  LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAP 141

Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217
           LK FM+KQTR+SDLALYVKLS  P+LQGPED+PLR+L+PAF+TSELKTAFQISFAIFIPF
Sbjct: 142 LKTFMIKQTRESDLALYVKLSKGPELQGPEDIPLRILVPAFVTSELKTAFQISFAIFIPF 201

Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268
           LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY
Sbjct: 202 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 252


>Q5QCQ6.1 Q5QCQ6_HERAR FliP
          Length = 271

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/231 (81%), Positives = 213/231 (92%), Gaps = 1/231 (0%)

Query: 39  LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97
           +AA AQQ GLPA TSTP PGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL
Sbjct: 41  MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 100

Query: 98  LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157
           LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K  AP
Sbjct: 101 LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 160

Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217
           LK FM+KQTR+SDLALYVK+S  P+LQGPED+PLR+L+PAFITSELKTAFQISFAIFIPF
Sbjct: 161 LKTFMIKQTRESDLALYVKMSKGPELQGPEDIPLRILVPAFITSELKTAFQISFAIFIPF 220

Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268
           LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY
Sbjct: 221 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 271


>A4G6A1.1 A4G6A1_HERAR Flagellar biosynthetic protein FliP
          Length = 252

 Score =  357 bits (915), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/231 (81%), Positives = 213/231 (92%), Gaps = 1/231 (0%)

Query: 39  LAAAAQQ-GLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSL 97
           +AA AQQ GLPA TSTP PGGGQTY+LS+QT+LLLT LSF+PA LLMMT FTRI+IVLSL
Sbjct: 22  MAAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSL 81

Query: 98  LRQALGTQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAP 157
           LRQALGTQS+PP QV++GLSLFLTLFVM PV DKIYVDAYQPF+ NKI M +A++K  AP
Sbjct: 82  LRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAP 141

Query: 158 LKEFMLKQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPF 217
           LK FM+KQTR+SDLALYVK+S  P+LQGPED+PLR+L+PAFITSELKTAFQISFAIFIPF
Sbjct: 142 LKTFMIKQTRESDLALYVKMSKGPELQGPEDIPLRILVPAFITSELKTAFQISFAIFIPF 201

Query: 218 LIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268
           LIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQLLIGSLA+SFY
Sbjct: 202 LIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSFY 252