BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0056.p (337 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ3.1 D8ISZ3_HERSS Flagellar motor switch FliM protein 610 e-173 Q5QCQ0.1 Q5QCQ0_HERAR FliM 541 e-152 A6SXX7.1 A6SXX7_JANMA FliM flagellar motor switch protein 539 e-151 F1VUF9.1 F1VUF9_9BURK Flagellar motor switch protein FliM 531 e-149 E4QKK4.1 E4QKK4_METS6 Flagellar motor switch protein FliM 504 e-141 >D8ISZ3.1 D8ISZ3_HERSS Flagellar motor switch FliM protein Length = 334 Score = 610 bits (1574), Expect = e-173, Method: Compositional matrix adjust. Identities = 304/334 (91%), Positives = 318/334 (95%) Query: 1 MAEHFLSQEEVDALLRGVTGDQDEEKSVEETPGTVRNYNLATQERIVRGRMPTLEIINER 60 MAEHFLSQEEVDALL+GVTGD+DEEK VEE PGTVR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MAEHFLSQEEVDALLKGVTGDEDEEKVVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 Query: 61 FARLFRIGLFNFLHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARLFRIGLFNF+HRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP Sbjct: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 Query: 121 QFVFLLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLDIVFENYSKSWEPIYPIEFEYI 180 QFVF+LVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVL+I FE Y+KSWEPIYPIEFE+I Sbjct: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 Query: 181 RSELNTQFANIATPNEVVVSTSFTIELGPVSGEIHICTPYSMIEPVRDKLTSSMQGEALE 240 RSE+NTQFANIATPNEVVVST+FT+ELGPVSGEIHICTPYSMIEPVRD+LTSSMQGEALE Sbjct: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 Query: 241 VDKRWIRLMKQQIQTAEVELIANFGTARVTFTDLLNMQVGDVIQLQTANPVTAQVDGVPV 300 VDKRWIRLMKQQIQTAEVELI NFGTARV FTDLL+MQVGDVI LQT V AQVDGVPV Sbjct: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 Query: 301 MECSYGKLNGQYALRVEKLLSITQSETPESIQGE 334 MECSYG+ NGQYALRVEKLLSIT ETPES QG+ Sbjct: 301 MECSYGQSNGQYALRVEKLLSITHQETPESFQGD 334 >Q5QCQ0.1 Q5QCQ0_HERAR FliM Length = 332 Score = 541 bits (1393), Expect = e-152, Method: Compositional matrix adjust. Identities = 254/336 (75%), Positives = 294/336 (87%), Gaps = 5/336 (1%) Query: 1 MAEHFLSQEEVDALLRGVTGDQDEEKSVEETPGTVRNYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALL+GV GDQDE E++ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQDEAGKPEDSTG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFLHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 F+RL RIGLFNFLHR+AE+S+GPV+VSKYSEFIRNLVVPTNLNL+H+KP RGIGL+V DP Sbjct: 60 FSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDP 119 Query: 121 QFVFLLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLDIVFENYSKSWEPIYPIEFEYI 180 VFLLVDN+FGGDGRFHTR+EGR+FT TEQRII R+L I+FE Y+KSWEP+YP+EFEYI Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFEYI 179 Query: 181 RSELNTQFANIATPNEVVVSTSFTIELGPVSGEIHICTPYSMIEPVRDKLTSSMQGEALE 240 RSE+NTQFANIATPNEVVV+T+FTIELGPVSG++H C PYSMIEP+RD LTSSMQGE LE Sbjct: 180 RSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIANFGTARVTFTDLLNMQVGDVIQLQTANPVTAQVDGVPV 300 +DKRWIRLM QQIQTAEVE++AN G+A+VT D+LNM++GD+I + VTA+VDGVPV Sbjct: 240 MDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVTAEVDGVPV 299 Query: 301 MECSYGKLNGQYALRVEKLLSITQSETPESIQGEQN 336 MECSYGKLNGQYALRVEKL+ T QGE + Sbjct: 300 MECSYGKLNGQYALRVEKLIYSANDTT----QGEDH 331 >A6SXX7.1 A6SXX7_JANMA FliM flagellar motor switch protein Length = 332 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 253/337 (75%), Positives = 294/337 (87%), Gaps = 5/337 (1%) Query: 1 MAEHFLSQEEVDALLRGVTGDQDEEKSVEETPGTVRNYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALL+GV GDQDE E++ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQDETGKPEDSAG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFLHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 F+RL RIGLFNFLHR+AE+S+GPV+VSKYSEFIRNLVVPTNLNL+H+KP RG GL+V DP Sbjct: 60 FSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGTGLIVLDP 119 Query: 121 QFVFLLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLDIVFENYSKSWEPIYPIEFEYI 180 VFLLVDN+FGGDGRFHTR+EGR+FT TEQRII R+L I+FE Y+KSWEP+YP+EFEYI Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFEYI 179 Query: 181 RSELNTQFANIATPNEVVVSTSFTIELGPVSGEIHICTPYSMIEPVRDKLTSSMQGEALE 240 RSE+NTQFANIATPNEVVV+T+FTIELGPVSG++H CTPY+MIEP+RD LTSSMQGE LE Sbjct: 180 RSEMNTQFANIATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTSSMQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIANFGTARVTFTDLLNMQVGDVIQLQTANPVTAQVDGVPV 300 +DKRWIRLM QQIQTAEVE++AN G+A+VT D+LNMQ GD+I + + +TA+VD VPV Sbjct: 240 MDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTITAEVDSVPV 299 Query: 301 MECSYGKLNGQYALRVEKLLSITQSETPESIQGEQNG 337 MECSYGKLNGQYALRVEKL+ T QGE +G Sbjct: 300 MECSYGKLNGQYALRVEKLIYSANDTT----QGEDHG 332 >F1VUF9.1 F1VUF9_9BURK Flagellar motor switch protein FliM Length = 333 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/337 (75%), Positives = 294/337 (87%), Gaps = 4/337 (1%) Query: 1 MAEHFLSQEEVDALLRGVTGDQDEEKSVEETPGTVRNYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALL+GV GDQ++ + E+ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQEDAHAPEDQSG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFLHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARL RIGLFNFL R+AE+S+GPV+VSKYSEFIRNLVVPTNLNLVH+KP RG L+VFDP Sbjct: 60 FARLLRIGLFNFLRRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVFDP 119 Query: 121 QFVFLLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLDIVFENYSKSWEPIYPIEFEYI 180 VFL+VDN+FGGDGRFHTR+EGR+FT TEQRII R+L IVFENY+KSWEP+YP+EFEYI Sbjct: 120 NLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFENYAKSWEPVYPVEFEYI 179 Query: 181 RSELNTQFANIATPNEVVVSTSFTIELGPVSGEIHICTPYSMIEPVRDKLTSSMQGEALE 240 RSE+NTQFANIATPNEVV+ T+FTIELGPVSGE+H C PYS IEP+RD LTSS+QGE LE Sbjct: 180 RSEMNTQFANIATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTSSLQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIANFGTARVTFTDLLNMQVGDVIQLQTANPVTAQVDGVPV 300 VDKRWIRLM QQIQTAEVE+IA+FG AR F +LNM+VGD+I L + V A+VDGVPV Sbjct: 240 VDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVLAKVDGVPV 299 Query: 301 MECSYGKLNGQYALRVEKLLSITQSETPESIQGEQNG 337 MEC+YGK NGQYALRVEKLL+ QS T +++ G+ NG Sbjct: 300 MECTYGKFNGQYALRVEKLLA--QSST-DALHGDDNG 333 >E4QKK4.1 E4QKK4_METS6 Flagellar motor switch protein FliM Length = 334 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/337 (71%), Positives = 277/337 (82%), Gaps = 4/337 (1%) Query: 1 MAEHFLSQEEVDALLRGVTGDQDEEKSVEETPGTVRNYNLATQERIVRGRMPTLEIINER 60 MA+ FLSQ+EVDALL+GV DQD+ VE P VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADSFLSQDEVDALLKGVGLDQDD-TPVEHDPHGVREYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFLHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARL RIGLFNF+ R+ E+SVGPV++SKYSEF+RNLVVPTNLNLVH+ P RG GL+VFDP Sbjct: 60 FARLLRIGLFNFMRRSVEVSVGPVRISKYSEFVRNLVVPTNLNLVHMNPLRGTGLMVFDP 119 Query: 121 QFVFLLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLDIVFENYSKSWEPIYPIEFEYI 180 VF +VDNMFGGDGRFHTRIEGR+FT TEQRII RVL IV ENY KSWEP+Y ++FEY+ Sbjct: 120 SLVFSIVDNMFGGDGRFHTRIEGRDFTQTEQRIIQRVLAIVIENYEKSWEPVYQVKFEYL 179 Query: 181 RSELNTQFANIATPNEVVVSTSFTIELGPVSGEIHICTPYSMIEPVRDKLTSSMQGEALE 240 RSE+NTQFANIATPNEV+V+T+F+IELGP GEIH C PYSMIEPVRD LTSS+QGE L Sbjct: 180 RSEMNTQFANIATPNEVIVATTFSIELGPAGGEIHFCFPYSMIEPVRDLLTSSLQGEVLG 239 Query: 241 VDKRWIRLMKQQIQTAEVELIANFGTARVTFTDLLNMQVGDVIQLQTANPVTAQVDGVPV 300 VDKRW+RLM QQIQ AEVEL+AN AR+ D+LNM+VGDVI L + + A VD VPV Sbjct: 240 VDKRWVRLMTQQIQAAEVELVANLAKARMQLGDVLNMKVGDVIPLNISETIEAHVDNVPV 299 Query: 301 MECSYGKLNGQYALRVEKLLSITQSETPESIQGEQNG 337 MEC YG NGQY+LRVEKLL SE ++GE++G Sbjct: 300 MECKYGVFNGQYSLRVEKLLRANASEY---VKGEKHG 333