BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0054.p (420 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein 251 1e-64 A6SXX9.1 A6SXX9_JANMA Flagellar hook-length control protein 172 8e-41 F1VUG1.1 F1VUG1_9BURK Flagellar hook-length control protein fliK 161 2e-37 Q5QCQ2.1 Q5QCQ2_HERAR Putative flagellar hook-length control pro... 159 1e-36 E6QR73.1 E6QR73_9ZZZZ Putative flagellar hook-length control pro... 149 6e-34 >D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein Length = 431 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 199/457 (43%), Positives = 250/457 (54%), Gaps = 63/457 (13%) Query: 1 MKTQLPILNV---ANLQNSARPATQADSFTADVPFNQVLNKEVSNRNAENQSK-----PS 52 M T LP+LNV + AR A ADSF+ADVPFNQVLN +VS RN +N S+ Sbjct: 1 MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60 Query: 53 EAAKDKSPEPAKAAPAPTASTAPKSDADKTASSDDKKTDDQAADDASAATDAASTQQMLA 112 E +P ++A + AS A S+ + ++ D+ K D A ASA ++LA Sbjct: 61 EQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQASA--------ELLA 112 Query: 113 LVTNMGQMIVQPPSR-KATDQDIDALASQKGKKPIGQIGAEAKTDLALADTQSEDKSKGK 171 LV N+ Q V+P + K+ D D LA K L+LAD Q GK Sbjct: 113 LVANIAQNAVKPVTDGKSEHTDADLLAQAK----------RGGASLSLADEQQALAGDGK 162 Query: 172 NNLLDLAALQDS---EKDAADGKSA-----------LPTRAT------------TEKSQA 205 + +DLA LQ S K DG +A PT A +EK+QA Sbjct: 163 DGKIDLAGLQSSLAANKGKQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQA 222 Query: 206 ESPVSAKSFQADLQDSAAAARNAKVAPEVNLKSIETPVQPTAATVVPALQQAMSLSQ-QA 264 S A + Q A A + ++ TPV V+PA+QQA++ +Q QA Sbjct: 223 LSKEDASTLANRAQYGKATTETVATAKQELPQATPTPV------VMPAMQQALAANQTQA 276 Query: 265 AMSGQAVQRLTPAVGSQGWDQAVGQKVLWMVNGGLQSASLTLNPPDLGPLQVVLHVNNQQ 324 ++ P VGS GWDQAVG K+ WM GG+QSASLTLNPPDLGP+QVVL+V+NQQ Sbjct: 277 VFGTTYTDKIQPNVGSAGWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQ 336 Query: 325 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGNP-NQQQGANQQQQARST 383 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTG P QQ QQQARS+ Sbjct: 337 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSS 396 Query: 384 SGNASSFGGRDNETDVNVAVVPRPVARGGQGLVDTFA 420 SG + G++ + ++ + G GLVDTFA Sbjct: 397 SGAGGA--GQEQDGEIAITGAATATTTSGLGLVDTFA 431 >A6SXX9.1 A6SXX9_JANMA Flagellar hook-length control protein Length = 391 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 153/399 (38%), Positives = 213/399 (53%), Gaps = 50/399 (12%) Query: 32 FNQVLNKEVSNR-NAENQSKPSEAAKDKSPEPAKAAPAPTASTAPKSDADKTASSDDKKT 90 FNQVL++E+S R N N + SEA K+ E T P ++A K + K T Sbjct: 33 FNQVLSREMSGRGNTTNNT--SEAGKNPGKESTNQGDKTKTETGPAAEAAKPVE-EGKVT 89 Query: 91 DDQAADDASAATDAASTQQMLALVTNMGQMIVQPPSRKATDQDIDALASQKGKKPIG-QI 149 +A + S + ++LA V + ++ T + +G + Sbjct: 90 APEAKTEESDTEAVTVSAELLAFVAAL--------TQANTAAVATTAPAASADAELGVTV 141 Query: 150 GAEAKTDLALADTQSEDKSKGKNNLLDLAALQDSEKDAADGKS---ALPTRATTEKSQAE 206 E + D A+ DT K NL+ AA DSEK+A KS A +AT ++A+ Sbjct: 142 KVEGELDPAV-DT------KLGANLITAAA--DSEKEAVGKKSDFVAALDKATKGGTEAK 192 Query: 207 SPVSAKSFQADLQDSAAAARNAKVAPEVNLKSIETPVQPTAATVVPALQQAMSLSQQAAM 266 + A + ++ + A A+ +K + ++ TP Q AA ALQQ +S +Q Sbjct: 193 NTPVAAPVKTEIDLATAIAQGSKA---LEPATVTTP-QTVAAVTAAALQQ-LSDAQ---- 243 Query: 267 SGQAVQRLTPAVGSQGWDQAVGQKVLWMVNGGLQSASLTLNPPDLGPLQVVLHVNNQQAD 326 G ++ P VG+ GWDQA+GQKVLWMV G QSA+LTLNPPDLGP+QV LHV+N QA Sbjct: 244 -GPQSNKIAPQVGNPGWDQALGQKVLWMVQGAQQSATLTLNPPDLGPMQVTLHVSNNQAT 302 Query: 327 ATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGNPNQQQGANQQQQARSTSGN 386 A F QPEV+ ALEAAMP+LREM++ AGIQLGQ+ V+ G PNQQ +Q+Q SG+ Sbjct: 303 ANFTAHQPEVRHALEAAMPRLREMLNDAGIQLGQSNVSAGTPNQQGSFGEQRQ----SGS 358 Query: 387 ASSFGGRDNETD-----VNVAVVPRPVARGGQGLVDTFA 420 A + N+ D V+V+ VP P + G GLVDTFA Sbjct: 359 AR----QSNQVDIADAAVHVSHVPVPAS--GNGLVDTFA 391 >F1VUG1.1 F1VUG1_9BURK Flagellar hook-length control protein fliK Length = 382 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 113/179 (63%), Gaps = 13/179 (7%) Query: 244 QPTAATVVPALQQAMSLSQQAAMSGQAVQRLTPAVGSQGWDQAVGQKVLWMVNGGLQSAS 303 QP A + + +QQ +L+ A L P V + WDQA+GQ+++WMV G QSA+ Sbjct: 215 QPVAGSALQPMQQ-TALTMAAPAGVHPGNSLAPQVNNSAWDQALGQRMVWMVAGAEQSAT 273 Query: 304 LTLNPPDLGPLQVVLHVNNQQADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATV 363 LTLNPPDLGPLQVVL+V+N QADA+F AQPEV+QALEAAMPKLREM+ AGI LGQA V Sbjct: 274 LTLNPPDLGPLQVVLNVSNGQADASFFAAQPEVRQALEAAMPKLREMLGDAGISLGQANV 333 Query: 364 NTGNPNQQQGANQQQQA--RSTSGNASSFGGRDNETDVNVAVVPRPVARGGQGLVDTFA 420 ++G+PN G+ Q R+T AS + V R + G G+VDTFA Sbjct: 334 SSGSPNPHSGSGQGDNGARRNTPAGASG----------STPVSARRITSSGNGMVDTFA 382 >Q5QCQ2.1 Q5QCQ2_HERAR Putative flagellar hook-length control protein FliK Length = 392 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/149 (56%), Positives = 105/149 (70%), Gaps = 8/149 (5%) Query: 273 RLTPAVGSQGWDQAVGQKVLWMVNGGLQSASLTLNPPDLGPLQVVLHVNNQQADATFITA 332 +L P VGS GWDQA+GQKV+WM+ G Q+A+LTLNPPDLGP+QV L+V+N QA A F Sbjct: 251 KLAPQVGSPGWDQALGQKVVWMIQGAQQTATLTLNPPDLGPMQVTLNVSNNQATANFTAH 310 Query: 333 QPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGNPN-QQQGANQQQQARSTSGNASSFG 391 QPEV+QALEAAMP+LREM++ AGIQLGQ++V+ G+PN QQ QQQ R S N Sbjct: 311 QPEVRQALEAAMPRLREMLNDAGIQLGQSSVSAGSPNQQQTSGEQQQGGRQASRN----- 365 Query: 392 GRDNETDVNVAVVPRPVARGGQGLVDTFA 420 DN + + V P+ G G+VDTFA Sbjct: 366 --DNAVEPVIHVSHVPLPSSGSGMVDTFA 392 >E6QR73.1 E6QR73_9ZZZZ Putative flagellar hook-length control protein FliK Length = 401 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/147 (51%), Positives = 100/147 (68%), Gaps = 6/147 (4%) Query: 274 LTPAVGSQGWDQAVGQKVLWMVNGGLQSASLTLNPPDLGPLQVVLHVNNQQADATFITAQ 333 L+P VG+ WD A+G+K++WMV G Q+ASL+LNPPDLGPLQ+VL+V N QA+ATFI+AQ Sbjct: 259 LSPQVGTSAWDHALGEKIVWMVGGAEQTASLSLNPPDLGPLQIVLNVTNNQANATFISAQ 318 Query: 334 PEVKQALEAAMPKLREMMDQAGIQLGQATVNTGNPNQQQGANQQQQARSTSGNASSFG-G 392 P+V+ A+EAAMPKL EM++ AGIQLGQ V+ Q N QQ +S S + Sbjct: 319 PDVRLAIEAAMPKLHEMLNNAGIQLGQTNVHANMSGHQ---NHQQNGQSDSRTFQTLNTA 375 Query: 393 RDNETDVNVAVVPRPVARGGQGLVDTF 419 R TD + + + + GQGLV+TF Sbjct: 376 RTTGTDATINISGKTIT--GQGLVNTF 400