BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0051.p (232 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ8.1 D8ISZ8_HERSS Flagellar assembly FliH protein 290 2e-76 A6SXY2.1 A6SXY2_JANMA FliH flagellar biosynthesis/type III secre... 224 8e-57 Q5QCQ5.1 Q5QCQ5_HERAR Putative flagellar assembly protein FliH 210 1e-52 F1VUG4.1 F1VUG4_9BURK Flagellar assembly protein FliH 209 3e-52 E6QR76.1 E6QR76_9ZZZZ Putative flagellar assembly protein FliH 205 3e-51 >D8ISZ8.1 D8ISZ8_HERSS Flagellar assembly FliH protein Length = 233 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/232 (66%), Positives = 187/232 (80%), Gaps = 3/232 (1%) Query: 4 RNNIIPKEQMTPYQRWEMASFDEPQEEIPPPEEQFAEEIPPP---PSLTLEEVDAIREQA 60 R IIPKE+MTPYQRWE+ASF + E P P + E + P P LT E++DAIRE A Sbjct: 2 RAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREAA 61 Query: 61 RQEGYAEGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQTSETMAPE 120 RQEG+AEG++ GLQAGR+EGYMAGLQQGQ E+NE IQH RQIAV+F TEVSQ SE MAPE Sbjct: 62 RQEGFAEGREHGLQAGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQCSEKMAPE 121 Query: 121 LLNLGLDISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAALVREHLGE 180 LL+L LD++K+M+KTAL +PEL+LPT+SAAI +LP LQLPA L L P+DAALVR+HLGE Sbjct: 122 LLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLGE 181 Query: 181 ELSRNGWRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWLE 232 EL++ GW++ ED L RGGC++ET TNQ+DAT TRW+R+ ESLSKQLDWLE Sbjct: 182 ELTQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233 >A6SXY2.1 A6SXY2_JANMA FliH flagellar biosynthesis/type III secretory pathway protein Length = 232 Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 19/238 (7%) Query: 5 NNIIPKEQMTPYQRWEMASFDE--PQEEIPPPEEQFAEEIPPPPSLTL---------EEV 53 +N+IPKE+ + YQRWEM SF+E P ++ P ++ AE + E++ Sbjct: 2 SNVIPKERQSAYQRWEMTSFNEEKPIVKVEPVKDAAAELAAANAAAAAHTANIAAMAEQI 61 Query: 54 DAIREQARQEGYAEGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQT 113 + R +A EGYA G ++G AG AEG + Q+ QT L QIA +FGTEV+Q Sbjct: 62 ENARAEAHAEGYAAGMEEGRAAGLAEGRVQAEQEKQT--------LLQIADTFGTEVAQA 113 Query: 114 SETMAPELLNLGLDISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAAL 173 +E +A ++L+L LD++KAM+KTALNV+PELI+P + AIH LP LQ PALL+L PDDAA+ Sbjct: 114 NELIASDMLDLALDLAKAMLKTALNVRPELIVPLVREAIHYLPTLQQPALLHLHPDDAAI 173 Query: 174 VREHLGEELSRNGWRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWL 231 + HLG+ELS WR+VEDP + RG CR+ET TNQ+DAT TRW+RIA +L K+ DWL Sbjct: 174 IASHLGDELSTAAWRVVEDPHMDRGSCRVETVTNQIDATTSTRWQRIAAALGKESDWL 231 >Q5QCQ5.1 Q5QCQ5_HERAR Putative flagellar assembly protein FliH Length = 233 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 155/233 (66%), Gaps = 10/233 (4%) Query: 5 NNIIPKEQMTPYQRWEMASF-DEPQ--EEIPPPEEQFAEEIPPPPSLTLEEVDAIREQ-- 59 +++IPKE+ + YQRWEM SF +EP + P S + + A+ +Q Sbjct: 4 SDVIPKEKQSAYQRWEMTSFGEEPAGGKASTPDTAASIAAANAAASAQMANIAAMAQQIE 63 Query: 60 -ARQEGYAEGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQTSETMA 118 AR + +AEG GL+ GRA AGL +G+ + + LRQIA +FGTEV+Q +E +A Sbjct: 64 DARAQAHAEGYAAGLEEGRA----AGLAEGRAQAEQERLSLRQIAETFGTEVAQANELIA 119 Query: 119 PELLNLGLDISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAALVREHL 178 ++L+L LD++KAM+KTALNV+PELI+P + AIH LP LQ P LL+L PDDAA+V H+ Sbjct: 120 NDMLDLSLDLAKAMLKTALNVRPELIIPLVREAIHYLPTLQQPTLLHLHPDDAAIVAVHM 179 Query: 179 GEELSRNGWRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWL 231 +ELS GWR+VED + RGGCR+E +NQ+DA+ TRW+RIA SL K+ DWL Sbjct: 180 NDELSAVGWRVVEDTHMGRGGCRVEAVSNQIDASAPTRWQRIAASLGKESDWL 232 >F1VUG4.1 F1VUG4_9BURK Flagellar assembly protein FliH Length = 219 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/228 (46%), Positives = 157/228 (68%), Gaps = 12/228 (5%) Query: 5 NNIIPKEQMTPYQRWEMASFDEPQEEIPPPEEQFAEEIPPPPSLTLEEVDAIREQARQEG 64 + IIPKE+ + YQRWEM SF + + P + A PP P +T+EE AIRE A+ +G Sbjct: 3 DAIIPKERQSAYQRWEMDSFGDNR----PSAQPQAPAAPPIPRVTIEEQAAIREAAQIKG 58 Query: 65 YAEGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQTSETMAPELLNL 124 YA GL GR EG L+ G+ E + I HLRQIAV+ G+E + E ++ +++ L Sbjct: 59 YA----TGLTDGRTEG----LRLGREEAHAEIDHLRQIAVALGSEAAIADELISVDVMRL 110 Query: 125 GLDISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAALVREHLGEELSR 184 LD+++AM+KTAL +KPEL+LP ++ AI LP +Q PALLYL PDDA LVRE + +EL + Sbjct: 111 ALDLAQAMLKTALEIKPELVLPIVAEAIRYLPNVQQPALLYLHPDDARLVREEMHDELDK 170 Query: 185 NGWRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWLE 232 GWR+ +D ++QRGGCR++T +NQ+DA+++TRW+R+ ++L + WL+ Sbjct: 171 AGWRIADDSQMQRGGCRIDTASNQIDASIETRWQRLTDALGQTPGWLK 218 >E6QR76.1 E6QR76_9ZZZZ Putative flagellar assembly protein FliH Length = 217 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/225 (46%), Positives = 143/225 (63%), Gaps = 10/225 (4%) Query: 7 IIPKEQMTPYQRWEMASFDEPQEEIPPPEEQFAEEIPPPPSLTLEEVDAIREQARQEGYA 66 +IPKEQ+T YQRWEMASF++ E+ P A EE+ I EQAR+EGY Sbjct: 1 MIPKEQLTAYQRWEMASFEDHPEQ-PSSVAGLAAS---------EELKVIHEQARREGYT 50 Query: 67 EGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQTSETMAPELLNLGL 126 G +G Q G EG +GL + + + I L I + E++Q +A +LL L Sbjct: 51 AGLTEGYQVGYDEGTQSGLNESRVAAQQLIAQLSLIITQYNEELAQADRQIAADLLTLAT 110 Query: 127 DISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAALVREHLGEELSRNG 186 I+ AM+KT L + PEL+LP I+AAIH LP LQ L L P D ALVREHL +EL+++G Sbjct: 111 GIAHAMLKTTLPIHPELLLPVITAAIHDLPALQRNTKLSLNPGDVALVREHLHDELAQHG 170 Query: 187 WRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWL 231 W +VEDP+++ GGCR+E+ +NQ+DAT+ TRW+R+A +L + LDWL Sbjct: 171 WSIVEDPQIEAGGCRIESNSNQLDATLNTRWQRLATALGQNLDWL 215