BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0050.p (331 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ9.1 D8ISZ9_HERSS Flagellar motor switch FliG protein 628 e-178 A4G691.1 A4G691_HERAR Flagellar motor switch protein FliG 535 e-150 A6SXY3.1 A6SXY3_JANMA FliG flagellar motor switch protein 531 e-149 F1VUG5.1 F1VUG5_9BURK Flagellar motor switch protein FliG 530 e-148 E4QKJ8.1 E4QKJ8_METS6 Flagellar motor switch protein FliG 519 e-145 >D8ISZ9.1 D8ISZ9_HERSS Flagellar motor switch FliG protein Length = 331 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 309/331 (93%), Positives = 324/331 (97%) Query: 1 MSNEGIQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMTTLKNISFEEINGVLDDFLA 60 MSN+G+QKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAM+ L+N+SFEEIN VL+ F+A Sbjct: 1 MSNDGVQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMSALRNVSFEEINEVLEAFVA 60 Query: 61 QTGQASSIGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120 +TGQASS+GLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI Sbjct: 61 ETGQASSLGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120 Query: 121 RNEHPQIIATILVHLERDHACDILNNFTERLRNDVILRIATLDGVQPTALRELNDVLTKL 180 RNEHPQIIATILVHLERDHAC I+NNFTERLRNDVILRIATLDGVQP ALRELNDVLTKL Sbjct: 121 RNEHPQIIATILVHLERDHACGIINNFTERLRNDVILRIATLDGVQPAALRELNDVLTKL 180 Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGESETSVMSNLRAYDEDMAQKIMDEMFVFENIID 240 LTGNESLKKQQMGGIRTAAEILNFMSGE+ETSVM+NLR+YDEDMAQKIMDEMFVFENIID Sbjct: 181 LTGNESLKKQQMGGIRTAAEILNFMSGENETSVMNNLRSYDEDMAQKIMDEMFVFENIID 240 Query: 241 IDGRGIQLLLREVQSESLIVALKGASQALRDKIFGNMSQRAAEMMREDLESKGPVRLSEV 300 IDGRGIQLLLREVQSESLIVALKGASQ LRDKIF NMSQRAAEMM+EDLESKGPVRLSEV Sbjct: 241 IDGRGIQLLLREVQSESLIVALKGASQGLRDKIFANMSQRAAEMMKEDLESKGPVRLSEV 300 Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFV 331 DAQQKAILQIVRRLADEGQIVLGAKGEDAF+ Sbjct: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFI 331 >A4G691.1 A4G691_HERAR Flagellar motor switch protein FliG Length = 331 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 261/331 (78%), Positives = 296/331 (89%) Query: 1 MSNEGIQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMTTLKNISFEEINGVLDDFLA 60 MS++GI KGA+LMLALG DEAAEVMKYLGP+EVQKLGAAM+T+K I EE+ VL +F A Sbjct: 1 MSDKGIHKGAVLMLALGADEAAEVMKYLGPREVQKLGAAMSTMKAIQSEELVSVLSEFRA 60 Query: 61 QTGQASSIGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120 +T + +S+GLDSD+YIR VLTKALGDDKA SLLNRILG RDASGIESLKWMDAQSVA+L+ Sbjct: 61 ETEKNTSLGLDSDDYIRDVLTKALGDDKAASLLNRILGARDASGIESLKWMDAQSVADLV 120 Query: 121 RNEHPQIIATILVHLERDHACDILNNFTERLRNDVILRIATLDGVQPTALRELNDVLTKL 180 RNEHPQIIATILVHLERD AC++L +FTERLRND +LRIATLDGVQP ALRELN+VLTKL Sbjct: 121 RNEHPQIIATILVHLERDQACEVLEHFTERLRNDCVLRIATLDGVQPAALRELNEVLTKL 180 Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGESETSVMSNLRAYDEDMAQKIMDEMFVFENIID 240 LTGNE+LKK+ MGGIR AAEILNF +GE+E SVM+NL+ YD DMAQKIMDEMFVF+NI+D Sbjct: 181 LTGNENLKKKPMGGIRAAAEILNFFNGENEVSVMANLKGYDNDMAQKIMDEMFVFDNIMD 240 Query: 241 IDGRGIQLLLREVQSESLIVALKGASQALRDKIFGNMSQRAAEMMREDLESKGPVRLSEV 300 I+ RGIQLLLREVQSESLI+ALKGA+ LR+K F NMSQRA EMMREDLESKGPVRLSEV Sbjct: 241 IEDRGIQLLLREVQSESLIIALKGATPDLREKFFKNMSQRAGEMMREDLESKGPVRLSEV 300 Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFV 331 +A QK ILQIVRRLADEGQ+ LG K EDA+V Sbjct: 301 EANQKEILQIVRRLADEGQLTLGGKAEDAYV 331 >A6SXY3.1 A6SXY3_JANMA FliG flagellar motor switch protein Length = 331 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/331 (78%), Positives = 293/331 (88%) Query: 1 MSNEGIQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMTTLKNISFEEINGVLDDFLA 60 M + G+ KGAILMLALG DEAAEVMKYLGP+EVQKLGAAM+T+K I EE+ VL +F A Sbjct: 1 MIDNGVHKGAILMLALGADEAAEVMKYLGPREVQKLGAAMSTMKAIQSEELVAVLSEFRA 60 Query: 61 QTGQASSIGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120 +T + +S+GLDSD+YIR VLTKALGDDKA SLLNRILG RDASGIESLKWMD QSVA+L+ Sbjct: 61 ETEKNTSLGLDSDDYIRDVLTKALGDDKAASLLNRILGARDASGIESLKWMDGQSVADLV 120 Query: 121 RNEHPQIIATILVHLERDHACDILNNFTERLRNDVILRIATLDGVQPTALRELNDVLTKL 180 RNEHPQIIATILVHLERD AC++L FTERLRNDV+LRIATLDGVQP ALRELN+VLTKL Sbjct: 121 RNEHPQIIATILVHLERDQACEVLERFTERLRNDVVLRIATLDGVQPAALRELNEVLTKL 180 Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGESETSVMSNLRAYDEDMAQKIMDEMFVFENIID 240 LTGNE+LKK+ MGG+R AAEILNF SGE+E SVM+NL++YD DMAQKIMDEMFVF+NI+D Sbjct: 181 LTGNENLKKKPMGGVRAAAEILNFFSGENEISVMANLKSYDNDMAQKIMDEMFVFDNIMD 240 Query: 241 IDGRGIQLLLREVQSESLIVALKGASQALRDKIFGNMSQRAAEMMREDLESKGPVRLSEV 300 I+ RGIQLLLREVQSESLIVALKGA+ LR+K F NMSQRA EMMREDLESKGPVRLSEV Sbjct: 241 IEDRGIQLLLREVQSESLIVALKGATPELREKFFKNMSQRAGEMMREDLESKGPVRLSEV 300 Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFV 331 + QK ILQI+RRLADEGQ+ LG K EDA+V Sbjct: 301 ETNQKEILQIIRRLADEGQLTLGGKAEDAYV 331 >F1VUG5.1 F1VUG5_9BURK Flagellar motor switch protein FliG Length = 319 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 258/319 (80%), Positives = 294/319 (92%) Query: 13 MLALGEDEAAEVMKYLGPKEVQKLGAAMTTLKNISFEEINGVLDDFLAQTGQASSIGLDS 72 MLALGEDEAAEVMK+L P+EVQKLGAAM+T+K IS EE++ VL F +T +S++GLDS Sbjct: 1 MLALGEDEAAEVMKFLSPREVQKLGAAMSTMKAISHEELDTVLKSFRQETESSSALGLDS 60 Query: 73 DEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELIRNEHPQIIATIL 132 DEYIR+VLTKALGDDKA+SLLNRILG RDASGIESLKWMD+QSVAELIRNEHPQIIATIL Sbjct: 61 DEYIRTVLTKALGDDKASSLLNRILGARDASGIESLKWMDSQSVAELIRNEHPQIIATIL 120 Query: 133 VHLERDHACDILNNFTERLRNDVILRIATLDGVQPTALRELNDVLTKLLTGNESLKKQQM 192 VHLER HAC++L++FTERLRNDV+LRIATLDGVQP ALRELN+VLTKLLTGNESLKK+ M Sbjct: 121 VHLERYHACEVLDHFTERLRNDVVLRIATLDGVQPAALRELNEVLTKLLTGNESLKKKPM 180 Query: 193 GGIRTAAEILNFMSGESETSVMSNLRAYDEDMAQKIMDEMFVFENIIDIDGRGIQLLLRE 252 GGIR AAEILNF+SGE+E SV++NL+ YD DMAQKIMDEMFVF+NI+DID RGIQ++LRE Sbjct: 181 GGIRAAAEILNFLSGENEQSVIANLKNYDSDMAQKIMDEMFVFDNIMDIDDRGIQVILRE 240 Query: 253 VQSESLIVALKGASQALRDKIFGNMSQRAAEMMREDLESKGPVRLSEVDAQQKAILQIVR 312 VQSESLIVALKGA+ LR+KIF NMS RAAEMMREDLESKGPVRLSEV+AQQK ILQ+VR Sbjct: 241 VQSESLIVALKGANVDLREKIFKNMSSRAAEMMREDLESKGPVRLSEVEAQQKEILQVVR 300 Query: 313 RLADEGQIVLGAKGEDAFV 331 RL+DEGQI LGAKG+DA+V Sbjct: 301 RLSDEGQIQLGAKGDDAYV 319 >E4QKJ8.1 E4QKJ8_METS6 Flagellar motor switch protein FliG Length = 331 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 249/331 (75%), Positives = 294/331 (88%) Query: 1 MSNEGIQKGAILMLALGEDEAAEVMKYLGPKEVQKLGAAMTTLKNISFEEINGVLDDFLA 60 MS +G+ K AILMLALGEDEAAEVMKYL PKEVQKLG+AM +K++ ++I V+ +FL Sbjct: 1 MSEDGVMKSAILMLALGEDEAAEVMKYLSPKEVQKLGSAMAGMKSVEHDQIEAVVTEFLD 60 Query: 61 QTGQASSIGLDSDEYIRSVLTKALGDDKATSLLNRILGGRDASGIESLKWMDAQSVAELI 120 Q +SIGLDSDEYIRSVLTKALGDDKA LLNRIL RDASGIESLKWMDAQ+VAE I Sbjct: 61 IADQKTSIGLDSDEYIRSVLTKALGDDKAAGLLNRILQTRDASGIESLKWMDAQTVAEFI 120 Query: 121 RNEHPQIIATILVHLERDHACDILNNFTERLRNDVILRIATLDGVQPTALRELNDVLTKL 180 +NEHPQIIATILVHLE D + ++L+NFT+RLR DV+LRIATLDGV+P ALRELN+V+TKL Sbjct: 121 KNEHPQIIATILVHLEPDQSAEVLSNFTDRLRQDVMLRIATLDGVKPVALRELNEVMTKL 180 Query: 181 LTGNESLKKQQMGGIRTAAEILNFMSGESETSVMSNLRAYDEDMAQKIMDEMFVFENIID 240 LTGNESLKKQQMGGI+ AAEI+N++ G++E SVM L++YDEDMAQKIMDEMFVF+N+ID Sbjct: 181 LTGNESLKKQQMGGIKAAAEIMNYLGGDNEASVMEGLKSYDEDMAQKIMDEMFVFDNVID 240 Query: 241 IDGRGIQLLLREVQSESLIVALKGASQALRDKIFGNMSQRAAEMMREDLESKGPVRLSEV 300 ID +GIQ++LREVQSE+LIVALKGA+Q LRDKIF NMS RAAEMMREDLE+KGPV+LSEV Sbjct: 241 IDDKGIQVMLREVQSETLIVALKGATQELRDKIFKNMSSRAAEMMREDLETKGPVKLSEV 300 Query: 301 DAQQKAILQIVRRLADEGQIVLGAKGEDAFV 331 +AQQK ILQI+RRLADEGQI+LG KG++A+V Sbjct: 301 EAQQKQILQIIRRLADEGQIILGGKGDEAYV 331