BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0049.p (568 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT00.1 D8IT00_HERSS Putative uncharacterized protein 823 0.0 F1VUG6.1 F1VUG6_9BURK Flagellar M-ring protein fliF 659 0.0 E6QR78.1 E6QR78_9ZZZZ Flagellar M-ring protein 645 0.0 A6SXY4.1 A6SXY4_JANMA Flagellar basal-body M-ring protein 636 e-180 A4G690.2 A4G690_HERAR Flagellar M-ring protein 627 e-177 >D8IT00.1 D8IT00_HERSS Putative uncharacterized protein Length = 569 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/566 (76%), Positives = 489/566 (86%), Gaps = 33/566 (5%) Query: 35 EPPRNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIV 94 +P +NG++ YA+SPQG+R++L++AAAA +A+M GIW+WSQK EYRVLFSNF+DRDGGAIV Sbjct: 5 QPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIV 64 Query: 95 ARX------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFL 148 A YKYS+GG+AILVPE MVHDARLKLA+QGLPKGGNVGFELMENQKLG+SQFL Sbjct: 65 ASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFL 124 Query: 149 EQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLD 208 EQVNFQRALEGELARS+ SL++VQ AR+HLALPKASVFVRDQQKPTASV+LSLYPGR LD Sbjct: 125 EQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLD 184 Query: 209 PQQVSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQP-ANGLDPTQLKYVQDLQQDI 267 PQQVSAIVHLVASSVPELSPK+VTIVDQNGNLLSDTTKQ N LDPTQLKYVQD+QQDI Sbjct: 185 PQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDI 244 Query: 268 IKRVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGN 327 +KRVESIIAPIVG GNVRAEATADVDFSRSEQA+E YKPNQT D+AAVRSKQSSE+ + + Sbjct: 245 VKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSAS 304 Query: 328 SSTSGIPGALTNQPPAXGT-----------------AAAP------ATSSGTSHKDATIN 364 + TSG+PGAL+NQPPA T AA P T++G S KD TIN Sbjct: 305 NGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETIN 364 Query: 365 YEVDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMG 424 YEVDKTVRY QQPMGGV+RLTVAVVVNYKRT D TGK+VM+PLTEAERNQI+DLVKEAMG Sbjct: 365 YEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMG 424 Query: 425 FNKDRGDSLNVVNTQFSSEMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPI 484 +NKDRGDSLNVVNTQFS++MEPE+PLWKQP MI LAKEIGKYVL+AAVLL+LYF VLRPI Sbjct: 425 YNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPI 484 Query: 485 IWKLSGREERE--AKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKN 542 +WKLSGREERE AKE+AEAEA AAA A AA +DPD+PDAIV LS E +E D R++YK N Sbjct: 485 VWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE-SEVDERAQYKAN 543 Query: 543 LESVKQLAKSDPKLVASIIKAWVNNE 568 LE+ KQ AK+DPKLVASIIK+WVNNE Sbjct: 544 LETAKQWAKNDPKLVASIIKSWVNNE 569 >F1VUG6.1 F1VUG6_9BURK Flagellar M-ring protein fliF Length = 564 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/557 (60%), Positives = 422/557 (75%), Gaps = 36/557 (6%) Query: 39 NGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX- 97 N ++ +A+S GR ++LM+ AA VIA+M G+WMWSQ+ +YRVLFSNF+DRDGGAIV + Sbjct: 12 NPLISFAESQGGRNLLLMLGAAIVIAVMAGVWMWSQQPDYRVLFSNFTDRDGGAIVTQLQ 71 Query: 98 -----YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQVN 152 YK++EGG AILVP VHDARL++A+ GLPKGGNVGFELMENQKLGVSQFLEQVN Sbjct: 72 QMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGGNVGFELMENQKLGVSQFLEQVN 131 Query: 153 FQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQV 212 FQRALEGELARS+QS+ AV++AR+HLA+PKASVFVRDQQKPTASV+L+L PGR L QQV Sbjct: 132 FQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNPGRSLSEQQV 191 Query: 213 SAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTK-QPANGLDPTQLKYVQDLQQDIIKRV 271 SAIVHLVASSVP+L P +++++DQNGNLLSDT+K A GLDPTQLKY+Q++QQ+I++R+ Sbjct: 192 SAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQEVQQNIVRRI 251 Query: 272 ESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSSTS 331 ESII PIVG NVRAEATAD+DFS SEQAAETYKPN + + +RS+QSSESQ N Sbjct: 252 ESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSESQGSNPGAG 311 Query: 332 GIPGALTNQPPAXG-------------------TAAAPATSSGTSHKDATINYEVDKTVR 372 G+PGAL+NQP A + A AT++ S KD T+NYEVDKTVR Sbjct: 312 GVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTVNYEVDKTVR 371 Query: 373 YVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFNKDRGDS 432 YVQQPMGGVKR++VAVVVNYK+ TD+ GKV PLTEAER QI+DLVKEAMGFNKDRGD+ Sbjct: 372 YVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAMGFNKDRGDT 431 Query: 433 LNVVNTQFSS---EMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPIIWKLS 489 LNVVN+ F+ E+ PE+P+WK+P+MIQLAKE+GKY+L LLYL+FGVLRP++ K + Sbjct: 432 LNVVNSAFAGVPKEVFPEVPIWKRPEMIQLAKELGKYLLGGIALLYLFFGVLRPMLKKFN 491 Query: 490 GREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKNLESVKQL 549 + + + + +A AM+ E + E A Y++NL+ KQL Sbjct: 492 TPQPKIRAVVDDEDDEAETPEMRAMH-------AAERTTEVPAESASMAYQQNLDLAKQL 544 Query: 550 AKSDPKLVASIIKAWVN 566 AK DPK+VA+I+K WV+ Sbjct: 545 AKDDPKVVANIVKNWVS 561 >E6QR78.1 E6QR78_9ZZZZ Flagellar M-ring protein Length = 552 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/558 (60%), Positives = 409/558 (73%), Gaps = 47/558 (8%) Query: 37 PRNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVAR 96 PR + + QS GR++ LM+ AAV+A+M GIWMWSQK +YRVLFSNFSD+DGGAIVA Sbjct: 11 PR--LTEFTQSANGRKLFLMLGIAAVVAIMAGIWMWSQKPDYRVLFSNFSDKDGGAIVAV 68 Query: 97 X------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQ 150 YKYS+GG AILVP VHD RLKLA+Q LPKGGNVGFELMENQKLG SQFLEQ Sbjct: 69 LQQMNVPYKYSDGGGAILVPADQVHDLRLKLAAQDLPKGGNVGFELMENQKLGTSQFLEQ 128 Query: 151 VNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQ 210 VNFQRALEGELA++IQ++SAVQAAR+HLALPK+SVFVR+QQKPTASV++ L PGR LDP Sbjct: 129 VNFQRALEGELAQTIQAISAVQAARVHLALPKSSVFVREQQKPTASVLIDLAPGRALDPA 188 Query: 211 QVSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQPAN-GLDPTQLKYVQDLQQDIIK 269 QV+AI+HL+ASSVP+L+ +VTIVDQNGNLLSD T + N GLDPTQLKY+Q +Q +I + Sbjct: 189 QVNAIIHLLASSVPDLTADNVTIVDQNGNLLSDNTSKSGNDGLDPTQLKYIQTVQHEIAE 248 Query: 270 RVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSS 329 R+E+II PIVG NV AE TAD+DFS SEQAAETYKPN DT A+RS+Q+SE+ N N++ Sbjct: 249 RIEAIITPIVGANNVHAEVTADIDFSHSEQAAETYKPNPAPDT-AIRSQQTSETMNDNNT 307 Query: 330 TSGIPGALTNQPPAXGTAA--APATS-------SGTS----------HKDATINYEVDKT 370 SGIPGAL+NQPPA TA APATS SG HKDAT NYEVDKT Sbjct: 308 ASGIPGALSNQPPAPATAPINAPATSTPAIPSASGNKTPAPDNPSIVHKDATTNYEVDKT 367 Query: 371 VRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFNKDRG 430 +RYVQQPMGG+KRL+VAVVVNY+ +TD+ GK+ PLT ++ QISDL KEAMG+++ RG Sbjct: 368 IRYVQQPMGGLKRLSVAVVVNYQTSTDKNGKLKKVPLTALQKTQISDLAKEAMGYDQTRG 427 Query: 431 DSLNVVNTQFSS--EMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPIIWKL 488 D+LNVVN+ F++ E+ E P WKQPD I+LAKE G+Y+L LLY+Y LRP+ KL Sbjct: 428 DTLNVVNSPFATTREVIAETPWWKQPDNIELAKEAGRYLLAFIALLYVYKKFLRPMFDKL 487 Query: 489 SGREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKNLESVKQ 548 A+E E E A +E + V LS A Y NLE VKQ Sbjct: 488 MAPPVHSAEEN-EPEFDADSEVEGSK---------VHLSHRDA------NYHTNLEKVKQ 531 Query: 549 LAKSDPKLVASIIKAWVN 566 LAK +PK+VA++IK WVN Sbjct: 532 LAKDNPKVVANVIKTWVN 549 >A6SXY4.1 A6SXY4_JANMA Flagellar basal-body M-ring protein Length = 585 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 334/576 (57%), Positives = 415/576 (72%), Gaps = 61/576 (10%) Query: 38 RNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX 97 +N + A+SP GR+V+LM+ +AAVIA+MI + +WSQK EY+VLFSNFSDRDGGAI++ Sbjct: 26 QNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMSSL 85 Query: 98 ------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQV 151 YK++EGG AILVP VH+ RLKLA++GLPKGG VGFELMENQKLGVSQFLEQV Sbjct: 86 QASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGGVGFELMENQKLGVSQFLEQV 145 Query: 152 NFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQ 211 NFQRALEGELARSIQS+ AVQAAR+HLA+PKASVFVRDQQKPTASV+L+L GR LD QQ Sbjct: 146 NFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRALDQQQ 205 Query: 212 VSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQPA--NGLDPTQLKYVQDLQQDIIK 269 VSAIVHLVASSVPELSPK+VTIVDQ+GNLLS+T K PA N LDP+QLKYVQ+LQQ I K Sbjct: 206 VSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNK-PAGSNTLDPSQLKYVQELQQSITK 264 Query: 270 RVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSS 329 R+ESII PIVG N+RAEATADVDFS SEQAAE YKPNQ ++A VRS Q+SES+ + Sbjct: 265 RIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGNGTG 324 Query: 330 TSGIPGALTNQPPAXGTA---AAPATSSGT------------------------------ 356 SG+PGALTNQP TA A P + GT Sbjct: 325 ASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAANAT 384 Query: 357 -SHKDATINYEVDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQI 415 + KD T N+EVDKTVRYVQQPMGG+KRL+VAVVVNYKR + GKV + PL+E E+NQI Sbjct: 385 PTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEKNQI 444 Query: 416 SDLVKEAMGFNKDRGDSLNVVNTQFSSEMEPEL---PLWKQPDMIQLAKEIGKYVLLAAV 472 +DLVKEAMG+NKDRGD+LNVVN+ F+ + E+ PLW++P++I++A + KY+ + V Sbjct: 445 TDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEIIEMAIQAAKYLAIGIV 504 Query: 473 LLYLYFGVLRPIIWKLSGREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAE 532 L LY +L+P++ KL+ E +AEA M+ L + Sbjct: 505 LFLLYRKLLKPMLNKLNPPPPEPLALEDE-----SAEALEKMH----------LEEDGKP 549 Query: 533 ADARSEYKKNLESVKQLAKSDPKLVASIIKAWVNNE 568 ++ Y++NLE+ K+LA+ DPK+VA+I+K+WV N+ Sbjct: 550 MGIQNTYQQNLEAAKELARKDPKVVANIVKSWVGND 585 >A4G690.2 A4G690_HERAR Flagellar M-ring protein Length = 562 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 339/566 (59%), Positives = 406/566 (71%), Gaps = 56/566 (9%) Query: 41 VVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIVARX--- 97 ++ A+SP GR+ +LMV AAVIA+MIG+ +W QK EYRVLFSNFSDRDGGAI+ Sbjct: 15 ILNMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAA 74 Query: 98 ---YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFLEQVNFQ 154 YK++EGG AILVP VH+ RLKLA++GLPKGG+VGFELMENQKLGVSQFLEQVNFQ Sbjct: 75 NVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGSVGFELMENQKLGVSQFLEQVNFQ 134 Query: 155 RALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDPQQVSA 214 RALEGELARSIQS+ AVQAAR+HLALPKASVFVRDQQKPTASV+L+L+ GR LD QQVSA Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194 Query: 215 IVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQPA--NGLDPTQLKYVQDLQQDIIKRVE 272 IVHLVASSVPELSPK+VTIVDQ GNLLS+ K PA N LDP+QLKYVQ+LQQ+I KR+E Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNK-PAGTNTLDPSQLKYVQELQQNIAKRIE 253 Query: 273 SIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGNSSTSG 332 SII PIVG NVRAEATADVDFS SEQAAE YKPNQ +A VRS+Q+SES NG+++ +G Sbjct: 254 SIITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATG 313 Query: 333 IPGALTNQPPAXGTAAAPATSSGTS--------------------------HKDATINYE 366 +PGALTNQP TA T T+ +D T NYE Sbjct: 314 VPGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYE 373 Query: 367 VDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMGFN 426 VDKT+RYVQQPMGG+KRL+VAVVVNYKR + GKV PLTE E+ QI+DLV+EAMG+N Sbjct: 374 VDKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYN 433 Query: 427 KDRGDSLNVVNTQFSS---EMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRP 483 KDRGD+LNVVN+ F+ E P+LPLW++P+ I + + KY+LL VLL LYF VL+P Sbjct: 434 KDRGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKP 493 Query: 484 IIWKLSGREEREAKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADAR-SEYKKN 542 ++ KL+ E + A EL E Y++N Sbjct: 494 LLNKLNPPPLALTDESGQPVGMAQ-----------------ELEEEVGPMGIHMHSYQQN 536 Query: 543 LESVKQLAKSDPKLVASIIKAWVNNE 568 LE+ K+LA+ DPK+VA+I+KAWV NE Sbjct: 537 LEAAKELARQDPKVVANIVKAWVGNE 562