BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0046.p (223 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT03.1 D8IT03_HERSS Flagellar brake protein YcgR 351 5e-95 A6SXY6.1 YCGR_JANMA Flagellar brake protein YcgR 223 2e-56 A4G687.1 A4G687_HERAR Flagellar brake protein YcgR 220 1e-55 F1W4B3.1 F1W4B3_9BURK Putative uncharacterized protein 192 4e-47 Q3SIH8.1 YCGR_THIDA Flagellar brake protein YcgR 136 2e-30 >D8IT03.1 D8IT03_HERSS Flagellar brake protein YcgR Length = 251 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 197/223 (88%) Query: 1 MERNQLLSLLIKGGSESIITSILDIDEGQNSVVIDAAPSASLNLSILQSNRIGFEALYNN 60 ME+NQLLSL+IKGGSES+ITSIL++D ++++ +DAAPSA LN SI+ S +I FEA+YN+ Sbjct: 29 MEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSAMLNESIVSSKQIDFEAIYNS 88 Query: 61 IRITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQDDGS 120 IRITF V+ A+ E+Q RPAL++DIPESLVRLQRRE+FRIPTPIAKPLRCTFR+TQ DGS Sbjct: 89 IRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRIPTPIAKPLRCTFRITQSDGS 148 Query: 121 FTTIVTLLNNISAGGVGLTDEKKILDSTVGRIYEDVSLEMTDNTIVTVKLVVRDCKEAKL 180 F T+VT+LNNISAGGVG+TDEKK+L +T G IYED LE+ DNT+V+VKL VRDCKE K+ Sbjct: 149 FVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLELGDNTLVSVKLQVRDCKEFKM 208 Query: 181 ASGKTVNRFGCEFVDLPRAVLAAVQRFITKLEREQNAKASGMM 223 +GK VNRFGC+F+D+PR VLAA+QRFITKLEREQNAKASGMM Sbjct: 209 TNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKASGMM 251 >A6SXY6.1 YCGR_JANMA Flagellar brake protein YcgR Length = 252 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 156/221 (70%), Gaps = 1/221 (0%) Query: 2 ERNQLLSLLIKGGSESIITSILDIDEGQNSVVIDAAPSASLNLSILQSNRIGFEALYNNI 61 ERNQL+ ++I G+++I+TSIL+IDE ++V++D AP+A +N +L SN++ FE + NI Sbjct: 32 ERNQLVRMVINHGADTIVTSILNIDETNDTVLLDCAPTAIMNQRVLDSNKLSFETVLENI 91 Query: 62 RITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQDDGSF 121 RI FN A+ C +++ PA I +P S+VRLQRRE++R+PTP+ P+ CT T +G Sbjct: 92 RILFNSPSAESCMYENLPAFVIPLPTSVVRLQRREFYRVPTPLTAPVSCTVPYTT-EGVT 150 Query: 122 TTIVTLLNNISAGGVGLTDEKKILDSTVGRIYEDVSLEMTDNTIVTVKLVVRDCKEAKLA 181 + T L+NIS GGV L DEKK+L +T+G Y++ + + + ++TV L VR+ E L Sbjct: 151 IEVATTLHNISGGGVSLVDEKKLLSTTIGLTYQNCKIVLPGSGLITVALQVRNVLELTLT 210 Query: 182 SGKTVNRFGCEFVDLPRAVLAAVQRFITKLEREQNAKASGM 222 +GK++NR GCEF++ LA VQ++ITK+EREQNAKA+G+ Sbjct: 211 NGKSINRIGCEFINPSNGTLATVQKYITKIEREQNAKATGL 251 >A4G687.1 A4G687_HERAR Flagellar brake protein YcgR Length = 251 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/221 (47%), Positives = 155/221 (70%), Gaps = 2/221 (0%) Query: 2 ERNQLLSLLIKGGSESIITSILDIDEGQNSVVIDAAPSASLNLSILQSNRIGFEALYNNI 61 ERNQL+ +LI G+++I+TSIL IDE N+V++D AP+A +N +L S ++ FE + NI Sbjct: 32 ERNQLVRMLINHGNDTIVTSILQIDETANTVLLDCAPTAIMNQRVLNSEKLSFETVLENI 91 Query: 62 RITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQDDGSF 121 RI FN A+ C +++ PA I +P S++RLQRRE++R+ TP+ P+ CT V +D Sbjct: 92 RILFNSPAAQSCIYENLPAFIIPLPTSVIRLQRREFYRVSTPVTNPVYCTIPVKTED-QI 150 Query: 122 TTIVTLLNNISAGGVGLTDEKKILDSTVGRIYEDVSLEMTDNTIVTVKLVVRDCKEAKLA 181 +V L+NIS GG+ + DEKK++DST GRIYE+ L++ +VT+ L VR+ E L Sbjct: 151 IPVVVPLHNISGGGLSVVDEKKLIDSTPGRIYENCRLDLPGG-VVTLALQVRNQLEVTLT 209 Query: 182 SGKTVNRFGCEFVDLPRAVLAAVQRFITKLEREQNAKASGM 222 +GK+++R GC FVD LAAVQ++ITKLER+QNAKA+G+ Sbjct: 210 NGKSIHRLGCAFVDPSNGALAAVQKYITKLERDQNAKATGL 250 >F1W4B3.1 F1W4B3_9BURK Putative uncharacterized protein Length = 255 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 2 ERNQLLSLLIKGGSESIITSILDIDEGQNSVVIDAAPSASLNLSILQSNRIGFEALYNNI 61 ++ QL+ LLI+ ++ +TS+L +DE ++++D S+ +L S I FE + I Sbjct: 35 DQRQLIRLLIEDSGDAGVTSVLHVDEANGNLILDVPADTSVTRRLLDSENISFETVLERI 94 Query: 62 RITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQDDGSF 121 RI F + + CE+ PAL I +P S++RLQRRE++R+ TP++ PLRCT ++ DG Sbjct: 95 RILFFSTRVEECEYGGLPALSIALPASMIRLQRREFYRVATPLSTPLRCTIQIV--DGET 152 Query: 122 TTIVTL-LNNISAGGVGLTDEKKILDSTVGRIYEDVSLEMTDNTIVTVKLVVRDCKEAKL 180 VTL L N+S GG+ + D++ LD TVGRIY + + +T+VT L +R+ + +L Sbjct: 153 VQPVTLSLLNVSGGGITIIDDQHQLDHTVGRIYHGCQIYLPGSTVVTTALEIRNSIDLRL 212 Query: 181 ASGKTVNRFGCEFVDLPRAVLAAVQRFITKLEREQNAKASGM 222 +GK +R GC F DLP+A+LA +QR+IT+LEREQNA+ +G+ Sbjct: 213 ENGKHTHRLGCLFHDLPKAMLAVIQRYITRLEREQNARNNGI 254 >Q3SIH8.1 YCGR_THIDA Flagellar brake protein YcgR Length = 255 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 123/212 (58%), Gaps = 1/212 (0%) Query: 2 ERNQLLSLLIKGGSESIITSILDIDEGQNSVVIDAAPSASLNLSILQSNRIGFEALYNNI 61 +R L++L + + I+TS+L ++E N+VV+D+A +LN ++ F A + + Sbjct: 39 KRKVLVNLDLSESRQIIVTSVLAVNEADNTVVLDSARGDALNNELMSGKGAEFVAQLDGV 98 Query: 62 RITFNVDKAKHCEFQSRPALKIDIPESLVRLQRREYFRIPTPIAKPLRCTFRVTQDDGSF 121 I+F++ CE++ PAL+I +P SL+RLQRRE+FR+P PIA P++C ++ S Sbjct: 99 SISFSIGAVSLCEYEKLPALRIPVPTSLIRLQRREHFRVPLPIANPVKCIVPSPWEE-SK 157 Query: 122 TTIVTLLNNISAGGVGLTDEKKILDSTVGRIYEDVSLEMTDNTIVTVKLVVRDCKEAKLA 181 I T L +I GGV LTD L + GR+ L + + +V L +R+ + +L Sbjct: 158 EQITTHLVDIGCGGVALTDIGARLGTESGRLLRGCRLLLPETDVVVTTLEIRNSAQIRLQ 217 Query: 182 SGKTVNRFGCEFVDLPRAVLAAVQRFITKLER 213 +G R GC+FVDLP + A +QRF+ +ER Sbjct: 218 NGSFQTRLGCKFVDLPNDMAAHLQRFVMNIER 249