BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0042.p         (222 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IT07.1 D8IT07_HERSS Flagellin-specific chaperone FliS protein       214   6e-54
A6SXZ0.1 A6SXZ0_JANMA FliS flagellar protein                          170   1e-40
F1W4A9.1 F1W4A9_9BURK Flagellar biosynthesis protein fliS             169   3e-40
A4JIN5.1 A4JIN5_BURVG Flagellar protein FliS                          152   5e-35
D7DQ10.1 D7DQ10_METS0 Flagellar protein FliS                          150   1e-34

>D8IT07.1 D8IT07_HERSS Flagellin-specific chaperone FliS protein
          Length = 154

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 116/130 (89%)

Query: 1   MFGTMQRGANAYANIGVETGVIAASPHKLITMLFDGAMVAIAMGQKYMKSGDIKNKGESI 60
           MFGTM+RGANAYANIGVETGV+AASPHKLITMLFDGA+VAIA+G+KYM  G+IK+KGESI
Sbjct: 1   MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60

Query: 61  TKAILIIESGLRASLNKNVGGEIAMNLDALYEYMGRRLLSANIENSQEILDEVHGLLDGL 120
           TKAILI+++GLRASLNK VGGE+A+NLD+LYEYM RRL  AN  N+  ILDEVH LL+ +
Sbjct: 61  TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120

Query: 121 REAWEQITPN 130
           R AWEQI PN
Sbjct: 121 RSAWEQIGPN 130


>A6SXZ0.1 A6SXZ0_JANMA FliS flagellar protein
          Length = 162

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query: 1   MFGTMQRGANAYANIGVETGVIAASPHKLITMLFDGAMVAIAMGQKYMKSGDIKNKGESI 60
           MFG+ Q GANAYA +G+ETGVIAA+PHKLI MLF+G  +A+    + M++G+I  KG++I
Sbjct: 1   MFGSPQSGANAYAKVGMETGVIAANPHKLIIMLFEGVQIALNNALQQMQAGNIPEKGKAI 60

Query: 61  TKAILIIESGLRASLNKNVGGEIAMNLDALYEYMGRRLLSANIENSQEILDEVHGLLDGL 120
           +K ILIIE+GLRASL+K+VGGEIA+NLDALYEYM  RLL AN+ N  EI+ EV  LL+ +
Sbjct: 61  SKGILIIENGLRASLDKSVGGEIAINLDALYEYMVGRLLLANLNNDAEIIHEVQTLLNDI 120

Query: 121 REAWEQITPNAADSADAQG 139
           + AWE+I P  A+ A   G
Sbjct: 121 KSAWEEIAPKTAEPAPVTG 139


>F1W4A9.1 F1W4A9_9BURK Flagellar biosynthesis protein fliS
          Length = 156

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 101/127 (79%)

Query: 1   MFGTMQRGANAYANIGVETGVIAASPHKLITMLFDGAMVAIAMGQKYMKSGDIKNKGESI 60
           MFG   RGANAYAN+ +ETGV +ASPHKLI MLFDGA+VA+A  ++ MK G+I+ KG+SI
Sbjct: 1   MFGKSSRGANAYANVSIETGVTSASPHKLIVMLFDGALVAVATAEQQMKDGNIQAKGKSI 60

Query: 61  TKAILIIESGLRASLNKNVGGEIAMNLDALYEYMGRRLLSANIENSQEILDEVHGLLDGL 120
           +KAI II++GLRASL+K VGG+IA +LDALY YM  RLL AN++N  EIL EVH LL  L
Sbjct: 61  SKAISIIDNGLRASLDKKVGGQIAESLDALYAYMSNRLLVANLKNQPEILQEVHTLLMDL 120

Query: 121 REAWEQI 127
           + AW+ I
Sbjct: 121 KSAWDAI 127


>A4JIN5.1 A4JIN5_BURVG Flagellar protein FliS
          Length = 144

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 96/130 (73%)

Query: 1   MFGTMQRGANAYANIGVETGVIAASPHKLITMLFDGAMVAIAMGQKYMKSGDIKNKGESI 60
           MF     GA+AYA +GVETGV+ ASPH+LI ML+ GA  AIA+G+ +++ G++  +GE+I
Sbjct: 1   MFSPGHAGASAYARVGVETGVMGASPHRLIAMLYQGARQAIALGRMHLQQGNVAARGEAI 60

Query: 61  TKAILIIESGLRASLNKNVGGEIAMNLDALYEYMGRRLLSANIENSQEILDEVHGLLDGL 120
            KAI I+ESGL+ASLN++VGGEIA  LDALY YMGRRLL AN + S  +L EV GLL  L
Sbjct: 61  GKAISIVESGLQASLNRDVGGEIAARLDALYTYMGRRLLQANAQGSDAMLVEVDGLLATL 120

Query: 121 REAWEQITPN 130
            EAW  I P 
Sbjct: 121 EEAWTGIAPE 130


>D7DQ10.1 D7DQ10_METS0 Flagellar protein FliS
          Length = 159

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 94/127 (74%)

Query: 1   MFGTMQRGANAYANIGVETGVIAASPHKLITMLFDGAMVAIAMGQKYMKSGDIKNKGESI 60
           MFG+ Q G N YA +G+ETGV+AASP+KLI ML++GA+ A      YM+S DI NKG  +
Sbjct: 1   MFGSNQYGVNVYAKVGLETGVLAASPNKLIIMLYEGAIAACRSADSYMQSKDIPNKGAML 60

Query: 61  TKAILIIESGLRASLNKNVGGEIAMNLDALYEYMGRRLLSANIENSQEILDEVHGLLDGL 120
           +KAI IIESGLR SL+K  GGEIA++LDALY YM +RL++ANI N  E++ EV  LL  L
Sbjct: 61  SKAISIIESGLRLSLDKKAGGEIAVSLDALYAYMSKRLMTANIHNKPELIHEVIKLLTDL 120

Query: 121 REAWEQI 127
           + AWE I
Sbjct: 121 KGAWEAI 127