BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0034.p         (94 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IT17.1 D8IT17_HERSS 30S ribosomal protein S18                       192   2e-47
A4G710.1 A4G710_HERAR 30S ribosomal protein S18                       182   1e-44
A6SXJ6.1 A6SXJ6_JANMA 30S ribosomal protein S18                       182   2e-44
F1W3J6.1 F1W3J6_9BURK SSU ribosomal protein S18p                      177   6e-43
C3XA44.1 C3XA44_OXAFO 30S ribosomal protein S18                       157   6e-37

>D8IT17.1 D8IT17_HERSS 30S ribosomal protein S18
          Length = 94

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/94 (98%), Positives = 93/94 (98%)

Query: 1  MAFGKKFDKSKLKQKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLK KRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA
Sbjct: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94


>A4G710.1 A4G710_HERAR 30S ribosomal protein S18
          Length = 94

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 92/94 (97%)

Query: 1  MAFGKKFDKSKLKQKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLK+KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRAR+LALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARFLALLPYTDLHNA 94


>A6SXJ6.1 A6SXJ6_JANMA 30S ribosomal protein S18
          Length = 94

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 92/94 (97%)

Query: 1  MAFGKKFDKSKLKQKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDK+KLK+KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKNKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRARYLALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARYLALLPYTDLHNA 94


>F1W3J6.1 F1W3J6_9BURK SSU ribosomal protein S18p
          Length = 96

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 93/96 (96%), Gaps = 2/96 (2%)

Query: 1  MAFGKKFDKSKLK--QKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIM 58
          MAFGKKFDK+KLK  +KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIM
Sbjct: 1  MAFGKKFDKNKLKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIM 60

Query: 59 PARLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          PARLTGT+AHYQRQVDTAIKRAR+LALLPYTDLH+A
Sbjct: 61 PARLTGTRAHYQRQVDTAIKRARFLALLPYTDLHHA 96


>C3XA44.1 C3XA44_OXAFO 30S ribosomal protein S18
          Length = 94

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 90/94 (95%)

Query: 1  MAFGKKFDKSKLKQKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDK+K K KR+QQNPLFKRKKFCRFTAAGVEQ+DYKD+DTLKDF+QEN KIMPA
Sbjct: 1  MAFGKKFDKNKNKDKRKQQNPLFKRKKFCRFTAAGVEQIDYKDIDTLKDFIQENCKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKAHYQRQVDTAIKRAR+LALLPYT LH+A
Sbjct: 61 RLTGTKAHYQRQVDTAIKRARFLALLPYTSLHSA 94