BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0021.p         (123 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IT30.1 D8IT30_HERSS Small multidrug resistance transmembrane p...   221   3e-56
F1W2Q1.1 F1W2Q1_9BURK Putative small multidrug resistance transm...   194   4e-48
D8NJS4.1 D8NJS4_RALSO Putative small multidrug resistance transm...   168   2e-40
E2T2F3.1 E2T2F3_9RALS Membrane protein                                162   2e-38
B2UAS6.1 B2UAS6_RALPJ Small multidrug resistance protein              161   3e-38

>D8IT30.1 D8IT30_HERSS Small multidrug resistance transmembrane protein
          Length = 123

 Score =  221 bits (563), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 118/123 (95%)

Query: 1   MNITTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFATGIKLATQLPIIGGLTCY 60
           MN+TTFGFIF GICLNAVAQLLLKAGTNAVGAIHLTAENWF+TG+KLA QLPIIGGL+CY
Sbjct: 1   MNLTTFGFIFAGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLAMQLPIIGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAVGAWYFLGEVVSAQRLLAIGVIIVGVILL 120
           VISV VWIIGLSRVDVT+AYP+LSLGYIINAVGAWYFLGE VS QRLLAIGVIIVGV+LL
Sbjct: 61  VISVVVWIIGLSRVDVTVAYPMLSLGYIINAVGAWYFLGEAVSLQRLLAIGVIIVGVVLL 120

Query: 121 TRS 123
           TRS
Sbjct: 121 TRS 123


>F1W2Q1.1 F1W2Q1_9BURK Putative small multidrug resistance transmembrane
           protein
          Length = 124

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 101/106 (95%)

Query: 1   MNITTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFATGIKLATQLPIIGGLTCY 60
           MN+ TFGFI  GICLNA+AQLLLKAGTNAVGAIHLTAENWF+TGIKLATQLPI+GGLTCY
Sbjct: 2   MNLPTFGFILTGICLNAIAQLLLKAGTNAVGAIHLTAENWFSTGIKLATQLPILGGLTCY 61

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAVGAWYFLGEVVSAQR 106
           V+SV VWIIGLSRVDVTIAYP+LSLGYIINAVGAWYFLGE+VS QR
Sbjct: 62  VVSVLVWIIGLSRVDVTIAYPMLSLGYIINAVGAWYFLGEMVSMQR 107


>D8NJS4.1 D8NJS4_RALSO Putative small multidrug resistance transmembrane
           protein
          Length = 123

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 99/123 (80%)

Query: 1   MNITTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFATGIKLATQLPIIGGLTCY 60
           MN+ TFG I  G+ LNA AQLLLKAG NA+G    + EN    GIKLATQLPIIGGLTCY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNAIGRFAFSVENIVPIGIKLATQLPIIGGLTCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAVGAWYFLGEVVSAQRLLAIGVIIVGVILL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NA+ AWY  GEV++AQRL+ I +I+VGV +L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAILAWYLFGEVLTAQRLIGIAIILVGVFVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123


>E2T2F3.1 E2T2F3_9RALS Membrane protein
          Length = 123

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 97/123 (78%)

Query: 1   MNITTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFATGIKLATQLPIIGGLTCY 60
           MN+ TFG I  G+ LNA AQLLLKAG N +G    +A+N    GIKLATQ PIIGGL+CY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNNIGRFAFSADNILPIGIKLATQWPIIGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAVGAWYFLGEVVSAQRLLAIGVIIVGVILL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NA  AWY  GEV+S QRL+ I +I+VGV++L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAFLAWYLFGEVLSVQRLIGIAIILVGVLVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123


>B2UAS6.1 B2UAS6_RALPJ Small multidrug resistance protein
          Length = 123

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 97/123 (78%)

Query: 1   MNITTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFATGIKLATQLPIIGGLTCY 60
           MN+ TFG I  G+ LNA AQLLLKAG N +G    +A+N    GIKLATQ PI+GGL+CY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNNIGRFAFSADNILPIGIKLATQWPIVGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAVGAWYFLGEVVSAQRLLAIGVIIVGVILL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NA  AWY  GEV+S QRL+ I +I+VGV++L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAFLAWYLFGEVLSVQRLIGIAIILVGVLVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123