BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0006.p         (67 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J0G0.1 D8J0G0_HERSS Cold shock-like transcription regulator pr...   133   8e-30
F1DLK3.1 F1DLK3_9BURK Cold shock-like protein CspD                    130   7e-29
A1X1M1.1 A1X1M1_9BURK Cold shock transcription regulator              130   7e-29
A6SY61.1 A6SY61_JANMA Cold shock transcription regulator protein      128   2e-28
A4G5Y5.1 A4G5Y5_HERAR Cold shock-like protein cspE (CSP-E)            128   2e-28

>D8J0G0.1 D8J0G0_HERSS Cold shock-like transcription regulator protein
          Length = 68

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ
Sbjct: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60

Query: 61 ASNIVP 66
          ASNIVP
Sbjct: 61 ASNIVP 66


>F1DLK3.1 F1DLK3_9BURK Cold shock-like protein CspD
          Length = 67

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>A1X1M1.1 A1X1M1_9BURK Cold shock transcription regulator
          Length = 67

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>A6SY61.1 A6SY61_JANMA Cold shock transcription regulator protein
          Length = 67

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>A4G5Y5.1 A4G5Y5_HERAR Cold shock-like protein cspE (CSP-E)
          Length = 67

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 64/66 (96%)

Query: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66