BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0021.p         (87 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q47IR5.1 IF12_DECAR Translation initiation factor IF-1 2              143   7e-33
D5CQ74.1 D5CQ74_SIDLE Translation initiation factor IF-1              141   3e-32
A1VKX0.1 IF1_POLNA Translation initiation factor IF-1                 140   6e-32
Q12DT7.1 IF12_POLSJ Translation initiation factor IF-1 2              139   1e-31
Q5P6C0.1 IF11_AROAE Translation initiation factor IF-1 1              139   2e-31

>Q47IR5.1 IF12_DECAR Translation initiation factor IF-1 2
          Length = 87

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 75/87 (86%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEELLEM G+V +VLPD+RFRV LENGH LIAYTSGKM++NHIRIL GDKVTLELSPY
Sbjct: 1  MAKEELLEMQGVVNDVLPDTRFRVTLENGHELIAYTSGKMKKNHIRILVGDKVTLELSPY 60

Query: 61 DLSKGRITFRHLEKRGPVGGGQQRRRY 87
          DLSKGRITFRH+E RG      QRRRY
Sbjct: 61 DLSKGRITFRHIENRGTPNPQAQRRRY 87


>D5CQ74.1 D5CQ74_SIDLE Translation initiation factor IF-1
          Length = 86

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 81/87 (93%), Gaps = 1/87 (1%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEELLEMNG+V+E+LPDSRFRV L+NGH+LIAY++GKM+++HIRI+AGDKV+LELSPY
Sbjct: 1  MAKEELLEMNGVVDEILPDSRFRVTLDNGHKLIAYSAGKMQKHHIRIVAGDKVSLELSPY 60

Query: 61 DLSKGRITFRHLEKRGPVGGGQQRRRY 87
          DLSKGRITFRH+E RGP    QQ+RR+
Sbjct: 61 DLSKGRITFRHIEGRGP-AVPQQKRRF 86


>A1VKX0.1 IF1_POLNA Translation initiation factor IF-1
          Length = 85

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 77/85 (90%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEEL+EM+GLV+EVLPDSRFRV L+NGH+L+AYTSGKMR+NHIRILAGD+V+LELSPY
Sbjct: 1  MAKEELIEMHGLVDEVLPDSRFRVTLDNGHKLVAYTSGKMRKNHIRILAGDQVSLELSPY 60

Query: 61 DLSKGRITFRHLEKRGPVGGGQQRR 85
          DLSKGRITFRH+  RGP    +Q R
Sbjct: 61 DLSKGRITFRHIAGRGPGPAPRQSR 85


>Q12DT7.1 IF12_POLSJ Translation initiation factor IF-1 2
          Length = 85

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 77/84 (91%), Gaps = 2/84 (2%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEEL+EM+GLV+EVLPDSRFRV L+NGH+L+AYTSGKMR+NHIRILAGD+V+LELSPY
Sbjct: 1  MAKEELIEMHGLVDEVLPDSRFRVTLDNGHKLVAYTSGKMRKNHIRILAGDQVSLELSPY 60

Query: 61 DLSKGRITFRHLEKRGPVGGGQQR 84
          DLSKGRITFRH+  RGP  G  QR
Sbjct: 61 DLSKGRITFRHIAGRGP--GPAQR 82


>Q5P6C0.1 IF11_AROAE Translation initiation factor IF-1 1
          Length = 85

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 78/85 (91%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEEL+EM+G+V EVLPDSRFRV L+NGH L+AY++GKMR++HIRIL GDKV+LELSPY
Sbjct: 1  MAKEELIEMSGMVVEVLPDSRFRVTLDNGHNLVAYSAGKMRKHHIRILCGDKVSLELSPY 60

Query: 61 DLSKGRITFRHLEKRGPVGGGQQRR 85
          DLSKGRITFRHLE RGP+G  ++RR
Sbjct: 61 DLSKGRITFRHLEGRGPLGPQRRRR 85