BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0019.p         (70 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IXE9.1 D8IXE9_HERSS Cold-shock transcription regulator protein      122   1e-26
C4ZJQ4.1 C4ZJQ4_THASP Cold-shock DNA-binding domain protein           110   5e-23
D8J0G0.1 D8J0G0_HERSS Cold shock-like transcription regulator pr...   110   6e-23
Q3SKY9.1 Q3SKY9_THIDA Possible Cold-shock DNA-binding domain pro...   108   2e-22
A1K7D3.1 A1K7D3_AZOSB Cold shock-like protein                         108   2e-22

>D8IXE9.1 D8IXE9_HERSS Cold-shock transcription regulator protein
          Length = 70

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 62/68 (91%)

Query: 3  TSQTGTVKWFNDAKGFGFITPDQGGDDLFAHFQDIQSNGFKSLAENQRVSFERGTGPKGE 62
          +SQTG VKWFNDAKGFGFITPD GG D+FAHFQDIQS GF+SL+ENQRVSF+RG GPKGE
Sbjct: 2  SSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGE 61

Query: 63 KATNIKAI 70
          KATNIK I
Sbjct: 62 KATNIKVI 69


>C4ZJQ4.1 C4ZJQ4_THASP Cold-shock DNA-binding domain protein
          Length = 69

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 60/70 (85%), Gaps = 1/70 (1%)

Query: 1  MSTSQTGTVKWFNDAKGFGFITPDQGGDDLFAHFQDIQSNGFKSLAENQRVSFERGTGPK 60
          MST QTGTVKWFNDAKGFGFITP+ GGDDLFAHF +IQS GFKSLAENQRV FE  TGPK
Sbjct: 1  MST-QTGTVKWFNDAKGFGFITPEGGGDDLFAHFSEIQSKGFKSLAENQRVEFEVKTGPK 59

Query: 61 GEKATNIKAI 70
          G +A NI+ +
Sbjct: 60 GLQAANIRPL 69


>D8J0G0.1 D8J0G0_HERSS Cold shock-like transcription regulator protein
          Length = 68

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 57/62 (91%)

Query: 6  TGTVKWFNDAKGFGFITPDQGGDDLFAHFQDIQSNGFKSLAENQRVSFERGTGPKGEKAT 65
          TGTVKWFNDAKGFGFITPD+GG+DLFAHF  IQSNGFKSL ENQRVSFE  TGPKG++A+
Sbjct: 3  TGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQAS 62

Query: 66 NI 67
          NI
Sbjct: 63 NI 64


>Q3SKY9.1 Q3SKY9_THIDA Possible Cold-shock DNA-binding domain protein
          Length = 68

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 58/66 (87%)

Query: 5  QTGTVKWFNDAKGFGFITPDQGGDDLFAHFQDIQSNGFKSLAENQRVSFERGTGPKGEKA 64
          +TGTVKWFNDAKGFGFITPD GG+DLFAHF  I +NGFKSL ENQRVSFE  TGPKG++A
Sbjct: 2  ETGTVKWFNDAKGFGFITPDNGGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPKGKQA 61

Query: 65 TNIKAI 70
          +NI+ +
Sbjct: 62 SNIQVV 67


>A1K7D3.1 A1K7D3_AZOSB Cold shock-like protein
          Length = 69

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 1/70 (1%)

Query: 1  MSTSQTGTVKWFNDAKGFGFITPDQGGDDLFAHFQDIQSNGFKSLAENQRVSFERGTGPK 60
          MST QTGTVKWFNDAKGFGFITP+ GGDDLFAHF +IQS+GFKSLAENQRV FE  +GPK
Sbjct: 1  MST-QTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPK 59

Query: 61 GEKATNIKAI 70
          G +A  I+ +
Sbjct: 60 GLQAAKIRPL 69