BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0006.p         (107 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SZ06.1 URE2_JANMA Urease subunit beta EC=3.5.1.5                    201   3e-50
D8IY64.1 D8IY64_HERSS Urease subunit beta EC=3.5.1.5                  187   5e-46
F1W416.1 F1W416_9BURK Urease beta subunit                             170   5e-41
Q473R0.1 URE2_CUPPJ Urease subunit beta EC=3.5.1.5                    164   3e-39
Q2Y9M8.1 URE2_NITMU Urease subunit beta EC=3.5.1.5                    164   6e-39

>A6SZ06.1 URE2_JANMA Urease subunit beta EC=3.5.1.5
          Length = 107

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/107 (91%), Positives = 100/107 (93%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGEMLVEPGDIELNVGR TA+V VANSGDRPIQVGSHFHF+ETNPALKFDR IGYGMR
Sbjct: 1   MIPGEMLVEPGDIELNVGRATATVKVANSGDRPIQVGSHFHFYETNPALKFDRAIGYGMR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGALDKKGNK 107
           LNI AGTAVRFEPGQERTVELVALAGDRKVYGFN KVMGALDKK  K
Sbjct: 61  LNITAGTAVRFEPGQERTVELVALAGDRKVYGFNGKVMGALDKKEGK 107


>D8IY64.1 D8IY64_HERSS Urease subunit beta EC=3.5.1.5
          Length = 114

 Score =  187 bits (474), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 98/112 (87%), Gaps = 6/112 (5%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGEMLVEPGDIELN GR T +VTVANSGDRPIQVGSHFHF+ETNPAL+F+R+  YGMR
Sbjct: 1   MIPGEMLVEPGDIELNTGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL------DKKGN 106
           LNIAAGTAVRFEPGQERTVELVALAGDR+VYGFNA VMG L      DKKG 
Sbjct: 61  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHGNDKKGQ 112


>F1W416.1 F1W416_9BURK Urease beta subunit
          Length = 97

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 87/96 (90%)

Query: 6   MLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMRLNIAA 65
           ML+E G+I LNVGRRTA+V +ANSGDRPIQVGSHFHFFETNPAL+FDR   YGMRLNIAA
Sbjct: 1   MLIEAGEIALNVGRRTATVVIANSGDRPIQVGSHFHFFETNPALQFDRDAAYGMRLNIAA 60

Query: 66  GTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL 101
           GTAVRFEPGQ+RTVELV LAG R VYGFNAKVMGAL
Sbjct: 61  GTAVRFEPGQQRTVELVDLAGARAVYGFNAKVMGAL 96


>Q473R0.1 URE2_CUPPJ Urease subunit beta EC=3.5.1.5
          Length = 101

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 86/101 (85%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           MIPGE++   G+IELN GR TASVTVAN+GDRPIQVGSHFHF+ETN AL FDR+   G R
Sbjct: 1   MIPGELMAADGEIELNAGRHTASVTVANTGDRPIQVGSHFHFYETNAALSFDREATRGFR 60

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL 101
           LNIAAGTAVRFEPGQ RTVELVAL GDR VYGFN K+MGAL
Sbjct: 61  LNIAAGTAVRFEPGQTRTVELVALDGDRIVYGFNGKIMGAL 101


>Q2Y9M8.1 URE2_NITMU Urease subunit beta EC=3.5.1.5
          Length = 113

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 87/101 (86%)

Query: 1   MIPGEMLVEPGDIELNVGRRTASVTVANSGDRPIQVGSHFHFFETNPALKFDRQIGYGMR 60
           +IPGE+  +PG+IELNVGR+T ++ VAN GDRPIQ+GSHFHF+E N A+KFDR+  YGMR
Sbjct: 12  LIPGEITTQPGEIELNVGRKTKTLKVANGGDRPIQIGSHFHFYEVNSAMKFDREEAYGMR 71

Query: 61  LNIAAGTAVRFEPGQERTVELVALAGDRKVYGFNAKVMGAL 101
           LNI AGTAVRFEPGQERTVELV LAG+R VYGFN KVMG L
Sbjct: 72  LNIMAGTAVRFEPGQERTVELVELAGNRIVYGFNQKVMGKL 112