BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0004.p         (224 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IR58.1 D8IR58_HERSS AMP-binding enzyme family protein               196   1e-48
E8ZA92.1 E8ZA92_9BURK Putative AMP-dependent synthetase and ligase    177   1e-42
Q1LF30.1 Q1LF30_RALME AMP-dependent synthetase and ligase             134   1e-29
Q4KJG4.1 Q4KJG4_PSEF5 AMP-binding enzyme family protein               131   7e-29
B4SN10.1 B4SN10_STRM5 AMP-dependent synthetase and ligase             128   5e-28

>D8IR58.1 D8IR58_HERSS AMP-binding enzyme family protein
          Length = 586

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 117/167 (70%)

Query: 29  PGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDAALQP 88
           PG R AL+  DT+ FAAALF  W AGKT YLPSD L +TC+ L  EVD F+GEF A    
Sbjct: 51  PGQRMALFHHDTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPA 110

Query: 89  LQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEALFGA 148
           L P+   A  D       L  D   LVVYTSGSTG AQAIPK+L Q++ EVATLEALFGA
Sbjct: 111 LHPAGDAAEGDTPDAWPTLRADFGGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGA 170

Query: 149 QAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDLAAM 195
             G A++++TVSHQHIYGLLFKVLW L AGR +HA SAFFPEDL  M
Sbjct: 171 IVGEAEVIATVSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRM 217


>E8ZA92.1 E8ZA92_9BURK Putative AMP-dependent synthetase and ligase
          Length = 616

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 114/166 (68%), Gaps = 1/166 (0%)

Query: 25  LSQRPGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDA 84
           L+++ G+RFALY  D+ +FA  L GAWQA KTIYL  D L  TC +L   VDG++GEF A
Sbjct: 50  LARQSGSRFALYSSDSATFACILLGAWQADKTIYLAGDVLPATCASLGTLVDGYLGEFPA 109

Query: 85  ALQPLQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEA 144
              PL   S   +  +    + L  D P LV+YTSGS+G  QA+PK LSQL+ EVA+LE 
Sbjct: 110 QYAPLTIDSDDEIQARPEF-KTLLPDFPGLVIYTSGSSGEPQAVPKFLSQLANEVASLEQ 168

Query: 145 LFGAQAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPE 190
           LFG + G ADIV+TVSHQHIYGLLFKVLWPL  GRAIHAR   + E
Sbjct: 169 LFGDRIGNADIVATVSHQHIYGLLFKVLWPLTQGRAIHARQISYLE 214


>Q1LF30.1 Q1LF30_RALME AMP-dependent synthetase and ligase
          Length = 557

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 101/168 (60%), Gaps = 9/168 (5%)

Query: 29  PGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDAALQP 88
           PGAR+AL++     FAAALFGAW AGK + LP D   +T  AL  +VDG  G+    LQP
Sbjct: 39  PGARWALFVDSPAEFAAALFGAWHAGKHVVLPGDARRDTLAALREQVDGMAGDLPQGLQP 98

Query: 89  LQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEALFGA 148
                  A       P+ LD     + ++TSGSTG  +A PK+L+QL  EV  LE  FG 
Sbjct: 99  ------SATESPLQWPR-LDARETWITLFTSGSTGAPEAAPKRLAQLEAEVHALEQAFGP 151

Query: 149 QAGAAD-IVSTVSHQHIYGLLFKVLWPLAAGRAIH-ARSAFFPEDLAA 194
                + +++TVSHQHIYGLLF VLWPLA GR++  AR AF  E +AA
Sbjct: 152 TMPRENRLLTTVSHQHIYGLLFTVLWPLAVGRSMPVARMAFHEELVAA 199


>Q4KJG4.1 Q4KJG4_PSEF5 AMP-binding enzyme family protein
          Length = 557

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 96/161 (59%), Gaps = 8/161 (4%)

Query: 32  RFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDAALQPLQP 91
           R A++L+D +  A AL GAW+AG ++ LP+D  A+T +  + EVD ++ + D  L  LQ 
Sbjct: 48  RLAVHLEDAVELAVALLGAWRAGASVLLPADLQAQTRQRWSSEVDLWLTDQDTPLHQLQA 107

Query: 92  SSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEALFGAQAG 151
           S           P  LD D   L + TSGS+G  + I K L QL+ EV  LE L+GA  G
Sbjct: 108 SPL--------APAELDPDTCQLSLCTSGSSGEPKRIEKNLRQLANEVVALEHLWGADLG 159

Query: 152 AADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDL 192
            A I+ +V+ QHIYGLLF+VLWPL AGR    R   FPEDL
Sbjct: 160 QAWIIGSVATQHIYGLLFRVLWPLCAGRPFVRRQLPFPEDL 200


>B4SN10.1 B4SN10_STRM5 AMP-dependent synthetase and ligase
          Length = 561

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 106/163 (65%), Gaps = 5/163 (3%)

Query: 30  GARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDAALQPL 89
           G  +ALY  D ++FAAALFGAW AGK ++L +D L  T +AL  +V GF G+  A  +PL
Sbjct: 49  GRDWALYFDDAVAFAAALFGAWHAGKRVFLAADNLPATLQALQPQVSGFAGDVSADYRPL 108

Query: 90  QPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEALFGAQ 149
             ++  A +D+    Q LD  A  L V+TSGSTG   AI K++ QL+ EV  L+A FG Q
Sbjct: 109 --AALGATSDEG--LQALDERACELCVFTSGSTGQPSAINKRMDQLTREVDALQAAFGTQ 164

Query: 150 AGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDL 192
                +  TVSHQHIYGLLF+VLWPLAAGR IH R  FF EDL
Sbjct: 165 LEGVQVHGTVSHQHIYGLLFRVLWPLAAGRLIHPRR-FFHEDL 206