BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0120.p (485 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J256.1 D8J256_HERSS C4-dicarboxylate transport sensor kinase t... 343 5e-92 F1VU66.1 F1VU66_9BURK Transporter 289 9e-76 B9PAI1.1 B9PAI1_POPTR Predicted protein (Fragment) 217 3e-54 D8P6X2.1 D8P6X2_RALSO Sensor histidine kinase, transcriptional r... 209 6e-52 B5SAP4.1 B5SAP4_RALSO C4-dicarboxylate transport sensor kinase p... 206 7e-51 >D8J256.1 D8J256_HERSS C4-dicarboxylate transport sensor kinase transcription regulator protein EC=2.7.3.- Length = 600 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 205/251 (81%), Gaps = 3/251 (1%) Query: 12 YQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRSTQ 71 YQ RRRL+ER+ SRDALRRAA EL+ IA RT +L ANQALE +Y LQQTESLLR+TQ Sbjct: 308 YQHRRRLEERMASRDALRRAAAELEQRIAERTGQLTAANQALEARYEKLQQTESLLRTTQ 367 Query: 72 NELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISGAS 131 NELVQAGKLAMLGQMAAGVTHELNQPL AIRAFADNAV+F+ RGQ Q ENLE+IS AS Sbjct: 368 NELVQAGKLAMLGQMAAGVTHELNQPLTAIRAFADNAVKFLARGQSAQAVENLEYISSAS 427 Query: 132 AHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSPVQVMG 191 A MGKIIAQLKGFARKSG+A+A VD++Q +EA+ LLL +E ++ +I ID+R+ V G Sbjct: 428 ATMGKIIAQLKGFARKSGEAVACVDLSQAIEASSLLLASECQKLGATISIDIRAAACVTG 487 Query: 192 DVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDSGPGIPDEVAPH 251 DVVRTEQVL+NLLRNA+DAVE E+ KR+ V++E G A++RIRDSG GI DEVAPH Sbjct: 488 DVVRTEQVLVNLLRNALDAVEEAEH---KRIAVVLEVAGGYALVRIRDSGGGIADEVAPH 544 Query: 252 LFEPFFTTKPS 262 LFEPFFTTK S Sbjct: 545 LFEPFFTTKSS 555 >F1VU66.1 F1VU66_9BURK Transporter Length = 604 Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 162/263 (61%), Positives = 195/263 (74%), Gaps = 3/263 (1%) Query: 1 MAIAAISLWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTL 60 M A +SLWA +QRRRRL+ER SR AL++AA+ELD I +RT EL AN+ L KY L Sbjct: 298 MLSAMLSLWARHQRRRRLEERQASRQALQQAAEELDLQITLRTGELLQANRDLGDKYARL 357 Query: 61 QQTESLLRSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQV 120 + E LLR+TQ+ELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAV F+ RGQ Q Sbjct: 358 EHAEQLLRTTQDELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVTFLERGQPAQA 417 Query: 121 EENLEHISGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIE 180 NL HIS ASA MG II QLKGFARKS ++A+V++ +V A+ LLL+ EF + V ++ Sbjct: 418 SANLAHISAASARMGVIIGQLKGFARKSHGSVALVELTPSVHASALLLQAEFDRLGVVLQ 477 Query: 181 IDVRSPVQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDS 240 +D+ P+Q+ GD VR EQVLINLLRNA+DAVE + V + V E A+I +RDS Sbjct: 478 LDIAGPLQITGDAVRLEQVLINLLRNALDAVEEAP---QRHVALSVAREGDHALICVRDS 534 Query: 241 GPGIPDEVAPHLFEPFFTTKPSG 263 GPGIPD+VA LF PFFTTKPSG Sbjct: 535 GPGIPDDVAAQLFAPFFTTKPSG 557 >B9PAI1.1 B9PAI1_POPTR Predicted protein (Fragment) Length = 404 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/319 (43%), Positives = 185/319 (57%), Gaps = 20/319 (6%) Query: 50 NQALEGKYVTLQQTESLLRSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAV 109 N+ LE + +TE LR+TQ+ELVQA KLA LGQMAAG+THELNQPLAA+R F+DN Sbjct: 4 NEQLEAEVTERARTEGELRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTR 63 Query: 110 QFMRRGQLPQVEENLEHISGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLR 169 + RGQL NL I+ + MGKI QLK FA K+ V V ++ + L+ Sbjct: 64 VLLERGQLDAATGNLSAIADLTERMGKITGQLKLFAGKARQRRNAVRVRAAIDHVLQLIA 123 Query: 170 NEFRQQAVSIEIDVR------SPVQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVT 223 + + + VR + + V D ++ EQVL+NL+ NA+ D RV Sbjct: 124 PRLGR----VMLRVRGLDGDAADLAVWADELKLEQVLLNLVGNAL-DAIAAAGAEDGRVD 178 Query: 224 VIVEHEAGEAVIRIRDSGPGIPDEVAPHLFEPFFTTKPSGX--------PNAPNALAIL- 274 + V + +RD+GPGI + P LFEPFFTTK G ++ + L +L Sbjct: 179 IAVSATDETVTLVVRDNGPGIAPDALPRLFEPFFTTKEIGQGLGLGLAISSSIDGLRVLF 238 Query: 275 IEDEQSVRKATTQTLELGGFSVQACADAEQALPLLHAGFAGIVVTDVRLPGRSGLEVLAH 334 +EDE VR+AT Q+LEL GFSV A AE A+P L A F G++VTDVRL G SGL++L H Sbjct: 239 VEDEPLVRQATAQSLELAGFSVLALPSAEAAMPHLGADFPGVLVTDVRLSGASGLDLLQH 298 Query: 335 AVAADADLPVIVVTGHGDV 353 A +PVI+VTGHGD+ Sbjct: 299 CRNAAPGVPVILVTGHGDI 317 >D8P6X2.1 D8P6X2_RALSO Sensor histidine kinase, transcriptional regulator of C4-dicarboxylate transport EC=2.7.13.3 Length = 635 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 123/254 (48%), Positives = 164/254 (64%), Gaps = 5/254 (1%) Query: 10 AIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRS 69 A+ R RR +E+ +R ALR ++L+A IA RT EL AN AL K L T+ +LR Sbjct: 334 ALRLRARRHEEQRSARAALREVQRDLEARIAQRTVELTSANAALASKVEALDATQRILRE 393 Query: 70 TQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISG 129 T++ VQAGKLA+LGQMAAG+THELNQPL A+ +DNA Q RG++ +V NL HI Sbjct: 394 TRDAAVQAGKLAVLGQMAAGITHELNQPLTALTTLSDNANQLAERGRIDEVRGNLAHIGQ 453 Query: 130 ASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEID-VRSPVQ 188 + MG+I++ +KGFARK A A V V + + A++L+ + RQ V + + V S V Sbjct: 454 LAHRMGRIVSHIKGFARKGDAARAAVPVEEAIRQALMLVDSRRRQAGVPVAVGRVPSGVA 513 Query: 189 VMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRI--RDSGPGIPD 246 V + VR EQVL+NL+RNAIDA T E + V V + G+A++RI RD+GPGI Sbjct: 514 VWANAVRLEQVLVNLIRNAIDA--TAEVPQPEAAGVQVSVDVGDALVRITVRDAGPGIAP 571 Query: 247 EVAPHLFEPFFTTK 260 +V PHLFEPFFTTK Sbjct: 572 QVLPHLFEPFFTTK 585 >B5SAP4.1 B5SAP4_RALSO C4-dicarboxylate transport sensor kinase protein EC=2.7.3.- Length = 635 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 120/257 (46%), Positives = 158/257 (61%), Gaps = 1/257 (0%) Query: 8 LWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLL 67 L A+ R RR +E+ +R ALR ++L+A IA RT EL AN AL K L T+ +L Sbjct: 332 LVALGLRARRHEEQRSARAALREVQRDLEARIAQRTVELTSANAALASKVEALDATQRIL 391 Query: 68 RSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHI 127 R T++ VQAGKLA+LGQMAAG+THELNQPL A+ +DNA Q RG++ +V NL HI Sbjct: 392 RETRDAAVQAGKLAVLGQMAAGITHELNQPLTALTTLSDNANQLAERGRIDEVRGNLAHI 451 Query: 128 SGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSP- 186 + MG+I++ +KGFARK A A V V + + A++L+ RQ V + + + P Sbjct: 452 GQLAHRMGRIVSHIKGFARKGDAARAAVPVEEAIRQALMLVDTRRRQAGVPVTVGLVPPG 511 Query: 187 VQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRDSGPGIPD 246 V V + VR EQVL+NL+RNAIDA V V V V+ I +RD+GPGI Sbjct: 512 VAVWANAVRLEQVLVNLIRNAIDATAEVPQPEAAGVRVTVDVGDALVCITVRDAGPGIAP 571 Query: 247 EVAPHLFEPFFTTKPSG 263 +V HLFEPFFTTK G Sbjct: 572 QVLSHLFEPFFTTKADG 588