BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0112.p         (60 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J246.1 D8J246_HERSS LysR family transcription regulator protein     105   3e-21
C5T4R5.1 C5T4R5_ACIDE Transcriptional regulator, LysR family           96   2e-18
F0Q2C0.1 F0Q2C0_ACIAP Transcriptional regulator, LysR family           95   3e-18
A1TQ86.1 A1TQ86_ACIAC Transcriptional regulator, LysR family           95   4e-18
A6UZY6.1 A6UZY6_PSEA7 HTH-type transcriptional activator AmpR          94   8e-18

>D8J246.1 D8J246_HERSS LysR family transcription regulator protein
          Length = 287

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 56/58 (96%)

Query: 1  MHLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          M+LPLNALRAFEV+ARHLSFT AA+EL+VTQTAVSMQVKNLE+RLGV LFRRLPRGLA
Sbjct: 1  MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLA 58


>C5T4R5.1 C5T4R5_ACIDE Transcriptional regulator, LysR family
          Length = 289

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 51/58 (87%)

Query: 1  MHLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          MHLPLNALRAFEVAARHL+ T AA ELNV+QTAVS  ++NLEERLG  LFRRLPRGLA
Sbjct: 1  MHLPLNALRAFEVAARHLNLTRAASELNVSQTAVSQHIRNLEERLGQPLFRRLPRGLA 58


>F0Q2C0.1 F0Q2C0_ACIAP Transcriptional regulator, LysR family
          Length = 301

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 1  MHLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          MHLPLNALRAFEV+ARHL+ T AA+EL+VTQTAVS  ++NLEERLG  LFRRLPRGLA
Sbjct: 1  MHLPLNALRAFEVSARHLNLTRAAEELHVTQTAVSQHIRNLEERLGKPLFRRLPRGLA 58


>A1TQ86.1 A1TQ86_ACIAC Transcriptional regulator, LysR family
          Length = 301

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 1  MHLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          MHLPLNALRAFEV+ARHL+ T AA+EL+VTQTAVS  ++NLEERLG  LFRRLPRGLA
Sbjct: 1  MHLPLNALRAFEVSARHLNLTRAAEELHVTQTAVSQHIRNLEERLGKPLFRRLPRGLA 58


>A6UZY6.1 A6UZY6_PSEA7 HTH-type transcriptional activator AmpR
          Length = 296

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 50/56 (89%)

Query: 2  HLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGL 57
          HLPLNALRAFE +ARHLSFT AA EL VTQ AVS QVK+LEERLGVTLF+RLPRGL
Sbjct: 5  HLPLNALRAFEASARHLSFTRAAIELCVTQAAVSHQVKSLEERLGVTLFKRLPRGL 60