BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0111.p         (77 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J246.1 D8J246_HERSS LysR family transcription regulator protein     141   3e-32
C5T4R5.1 C5T4R5_ACIDE Transcriptional regulator, LysR family          128   2e-28
Q2SJQ3.1 Q2SJQ3_HAHCH Transcriptional regulator                       123   1e-26
F0Q2C0.1 F0Q2C0_ACIAP Transcriptional regulator, LysR family          123   1e-26
D5RSM9.1 D5RSM9_9PROT Transcriptional activator AmpR                  122   1e-26

>D8J246.1 D8J246_HERSS LysR family transcription regulator protein
          Length = 287

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
           VL QFE+GR REVLT+GVVGTFAVGWLMPRLR+FQQ +PFVDLRLLTNNNRVDLAGEGLD
Sbjct: 80  VLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLRLLTNNNRVDLAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
           YAIRFGDGAWHGT
Sbjct: 140 YAIRFGDGAWHGT 152


>C5T4R5.1 C5T4R5_ACIDE Transcriptional regulator, LysR family
          Length = 289

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 63/73 (86%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
            L QF   R REVLT+G VGTF VGWL+PRLREFQQ  PFVDLRLLT+NNRVD+AGEGLD
Sbjct: 80  ALEQFSQSRPREVLTVGAVGTFTVGWLLPRLREFQQACPFVDLRLLTHNNRVDIAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
           YAIRFGDGAWHGT
Sbjct: 140 YAIRFGDGAWHGT 152


>Q2SJQ3.1 Q2SJQ3_HAHCH Transcriptional regulator
          Length = 298

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 2   LGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLDY 61
           L + E G++REVL+LGVVGTFAVGWL+PRL +FQQ +PFV++RL TNNNRVD+A EGLDY
Sbjct: 84  LSRLEGGQVREVLSLGVVGTFAVGWLLPRLADFQQQHPFVEIRLSTNNNRVDIAAEGLDY 143

Query: 62  AIRFGDGAWHGTXGA 76
           AIRFGDGAWHG   A
Sbjct: 144 AIRFGDGAWHGVDAA 158


>F0Q2C0.1 F0Q2C0_ACIAP Transcriptional regulator, LysR family
          Length = 301

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 62/73 (84%)

Query: 1   VLGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLD 60
            L Q  + R REVLT+G VGTFAVGWL+PRL+ FQQ  PFVDLRLLTNNNRVDLAGEGLD
Sbjct: 80  ALAQCSDTRPREVLTVGAVGTFAVGWLLPRLQAFQQQCPFVDLRLLTNNNRVDLAGEGLD 139

Query: 61  YAIRFGDGAWHGT 73
            AIRFGDGAWHGT
Sbjct: 140 CAIRFGDGAWHGT 152


>D5RSM9.1 D5RSM9_9PROT Transcriptional activator AmpR
          Length = 291

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 65/72 (90%)

Query: 2   LGQFENGRMREVLTLGVVGTFAVGWLMPRLREFQQTYPFVDLRLLTNNNRVDLAGEGLDY 61
           L +FE G++REVLT+GVVG+ AVGWL+PRL  F+Q +PF+DLRLLTNNNRVDLAGEGLD 
Sbjct: 86  LDRFEAGQVREVLTVGVVGSLAVGWLLPRLERFRQAHPFIDLRLLTNNNRVDLAGEGLDC 145

Query: 62  AIRFGDGAWHGT 73
           AIRFGDGAWHGT
Sbjct: 146 AIRFGDGAWHGT 157