BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0095.p (603 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1E6.1 D8J1E6_HERSS Methyl-accepting chemotaxis transducer tra... 721 0.0 C6BG84.1 C6BG84_RALP1 Methyl-accepting chemotaxis sensory transd... 671 0.0 B2U9E6.1 B2U9E6_RALPJ Methyl-accepting chemotaxis sensory transd... 667 0.0 E2SZP9.1 E2SZP9_9RALS Chemotaxis sensory transducer 667 0.0 D8NUX5.1 D8NUX5_RALSO Methyl-accepting chemotaxis transducer tra... 654 0.0 >D8J1E6.1 D8J1E6_HERSS Methyl-accepting chemotaxis transducer transmembrane protein Length = 609 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/513 (74%), Positives = 439/513 (85%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +LSF ++LW PLV+SLIALLAIS+F+A NIRLEERK DL N+ Q A+S +K YG LA Sbjct: 3 QLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 +G +SKE+AQK A +K +RYG DGYFS+S S + VMHPIK EL+GKDL+NFKDPAG Sbjct: 63 DSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N +FV+I KA + P+GGF++Y+WPKVG+ +PVPKTS+ Y+PWDW +TTG YMDD+NAA Sbjct: 123 NNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F ++++Q+ + S L+ALV+V N ILR IGGDP AAE+ANRI+ GDLT I TA Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGD+SSL+YA + MRDSL TI+NIK+SA TIA+AS EIASGNLDLS RTEQQAGS+EET Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAMEELT+TVKQNADNARQANQLA SASEVAIQGG+VVSQVV TM I +SSRKI DII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIKTLIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 +KVD GSKLV+QAGATM EVVASV+RVTDIVGEISSASQEQSAGI EVG+AITQMDEGTQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAAQSLQDQAATLA LVGRF +D Sbjct: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVD 515 >C6BG84.1 C6BG84_RALP1 Methyl-accepting chemotaxis sensory transducer with Cache sensor Length = 618 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/514 (67%), Positives = 420/514 (81%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PLVISL+AL IS+FNAYQA IR+EERK +L++V +AM+ +K+Y +L Sbjct: 3 KLSFRQKLWLPLVISLVALTLISVFNAYQAREIRMEERKNNLVSVTTMAMNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK AL R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKQALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V ++ AA P+GGF +Y+WPKVG DPVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYVGLSNAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLT+ I T Sbjct: 183 FMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDA 515 QNAALVE+AAAAAQSL++QA +L Q+V +F+LDA Sbjct: 483 QNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLDA 516 >B2U9E6.1 B2U9E6_RALPJ Methyl-accepting chemotaxis sensory transducer Length = 621 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/549 (64%), Positives = 435/549 (79%), Gaps = 12/549 (2%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PL+ISL+AL IS+FNAYQA IR+EERK +L++V +A++ +K+Y +L Sbjct: 3 KLSFRQKLWLPLIISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAVNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK AL R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKEALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V ++ AA P+GGF +Y+WPKVG +PVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYVGLSNAAKDPKGGFTSYVWPKVGGSEPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLTL I T Sbjct: 183 FMTSLYQTGGLLVLVGGLLLLLGGVANRSLQRTLGGDPAYAADVANRIAGGDLTLEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D +SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNNSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDAGHVXQ---LVGRFKLDAGHVQ----- 533 QNAALVEQAAAAAQSL++QA +L Q+V +F+LDA H + +V R + V+ Sbjct: 483 QNAALVEQAAAAAQSLEEQAVSLTQVVAQFRLDA-HALRAPAMVARVEPAVAPVKPVALA 541 Query: 534 ---APANPK 539 APA+PK Sbjct: 542 TPMAPASPK 550 >E2SZP9.1 E2SZP9_9RALS Chemotaxis sensory transducer Length = 618 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/514 (66%), Positives = 418/514 (81%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PLVISL+AL IS+FNAYQA IR+EERK +L++V +AM+ +K+Y +L Sbjct: 3 KLSFRQKLWLPLVISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAMNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK A+ R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKQAIDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+ + AA P+GGF +Y+WPKVG DPVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYAGLTTAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLT+ I T Sbjct: 183 FMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDA 515 QNAALVE+AAAAAQSL++QA +L Q+V +F+LDA Sbjct: 483 QNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLDA 516 >D8NUX5.1 D8NUX5_RALSO Methyl-accepting chemotaxis transducer transmembrane protein Length = 617 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/513 (65%), Positives = 411/513 (80%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PL SLIAL +S+FNAYQA IR+EERK +L++V +A++ +K+Y +L Sbjct: 3 KLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDDLV 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 + G +++EEAQK AL R + +RY DGYF+++ S V VMHPIKPE GKD T FKD G Sbjct: 63 RGGILTREEAQKQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V++ AA P GGF +Y+WP VG + VPKT+YA RYEPWDW+ +TG YMDD+NAA Sbjct: 123 NSVYVNLTSAARQPSGGFTSYVWPHVGGTEQVPKTAYAQRYEPWDWVFSTGAYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+Y ++ +L+ L V NR + R +GGDP AAE+ANRI+ GDL++ I T Sbjct: 183 FMTSLYGAAGLLLLAGTVLVVLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 P D SL+YA RMR +L TI I+ +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 PDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAMEEL STV+QNADNA QANQLAVSAS+VA++GG VVS+VVDTMGSIN SSRKIVDII Sbjct: 303 ASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVDTMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIKTLIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 + VD GS LV++AG TM E+VASV+RVTDIVGEI++ASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 TNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAAQSLQ+QA +L Q+V +F+LD Sbjct: 483 QNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD 515