BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0054.p         (396 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J280.1 D8J280_HERSS Periplasmic sensor signal transduction his...   513   e-143
F1VZ64.1 F1VZ64_9BURK Putative uncharacterized protein                423   e-116
A6T207.1 A6T207_JANMA Sensor histidine kinase transcription regu...   259   5e-67
Q47IZ4.1 Q47IZ4_DECAR ATP-binding region, ATPase-like:Histidine ...   256   4e-66
Q1H1R1.1 Q1H1R1_METFK Periplasmic sensor signal transduction his...   252   6e-65

>D8J280.1 D8J280_HERSS Periplasmic sensor signal transduction histidine
           kinase protein
          Length = 459

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/390 (62%), Positives = 308/390 (78%)

Query: 4   KTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVMN 63
           +T+ ELT+QAEQ+LRS+H DT +F VR++ G+ + GD  FP +      + P+ YDG M 
Sbjct: 64  RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123

Query: 64  GEQVRIAVLYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAVN 123
           GE VRIA + V ++   I++ +AET RKR++ HY IL+S L+LDGALTF SI +V++AV 
Sbjct: 124 GEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVR 183

Query: 124 KGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLAN 183
           +GL PL+ L++NL+QR+H  L  I+ +    EL P+I A+N L+  I KG  AQQNF+A+
Sbjct: 184 RGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMAD 243

Query: 184 VAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPSR 243
           VAHQ+RTPLTGL+LQLE LH +H D+P+TA S  +M SSVERM+RQS QLLALAR+EP  
Sbjct: 244 VAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGL 303

Query: 244 FKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDNA 303
           F+   LE+L LDKLVEESVQHFIE+ADKK+IDLGFDL+PAR++GDRF+L DLIDNL+DNA
Sbjct: 304 FESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNA 363

Query: 304 VRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLAI 363
           VRYSPP  TVTV C E++DAT+L+VEDSGPGIAPEHRELIFDRFYR NDK+AGSGLGLAI
Sbjct: 364 VRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAI 423

Query: 364 VRDIAKDHGGEITLTSGEANCGTIFTVRFP 393
           VR+IA DHGG I++   E   GTIFTVRFP
Sbjct: 424 VREIAHDHGGVISVDCKEQGQGTIFTVRFP 453


>F1VZ64.1 F1VZ64_9BURK Putative uncharacterized protein
          Length = 452

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/391 (53%), Positives = 277/391 (70%)

Query: 3   GKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVM 62
           G   ++L +QAEQ+LR DH D +YF+VRD  G+ +AGD +FP +      N+PV Y G M
Sbjct: 60  GTILVDLPQQAEQVLRLDHVDEIYFIVRDQAGQVVAGDKDFPSLPAPQKLNDPVAYSGTM 119

Query: 63  NGEQVRIAVLYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAV 122
            GE +R+ VL   +    + I ++ET RKR+     I   L +L+G LT  SIA+V +AV
Sbjct: 120 RGEAIRMIVLKARVGTQVVSISVSETLRKRSLIRTEIFAGLFVLEGLLTAISIALVWLAV 179

Query: 123 NKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLA 182
            +GL PL++++ +LD R+HD L P+       EL P++ AIN+LL  ++ GA+AQQ FLA
Sbjct: 180 TRGLLPLKKMQADLDARSHDTLAPVSDVHLPRELRPLVDAINTLLGKVQAGAAAQQAFLA 239

Query: 183 NVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPS 242
           NVAHQ+RTPL  L++QLEWL QRH    ETAHS  LM ++  RM+R +NQLLALARAEPS
Sbjct: 240 NVAHQLRTPLAALQMQLEWLQQRHPQGHETAHSATLMLTATARMIRHTNQLLALARAEPS 299

Query: 243 RFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDN 302
           R +    E++ L  L+E++VQ F+EQA +KQIDLGFDLQPA ++ D F+LRDLIDNL+DN
Sbjct: 300 RLEKDRFEEVDLCHLIEDAVQVFVEQAVRKQIDLGFDLQPAPLRADPFLLRDLIDNLIDN 359

Query: 303 AVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLA 362
           A+RYSP  STVTVSCR +E+A L  VEDSGPGIA   RELIF+RFYR+++ +AGSGLGLA
Sbjct: 360 AIRYSPAGSTVTVSCRCEEEAVLFLVEDSGPGIAESRRELIFNRFYRLDESVAGSGLGLA 419

Query: 363 IVRDIAKDHGGEITLTSGEANCGTIFTVRFP 393
           IVRDI   H  E+ L +G    GT F+VRFP
Sbjct: 420 IVRDIVLAHDAEMQLGAGPGGKGTTFSVRFP 450


>A6T207.1 A6T207_JANMA Sensor histidine kinase transcription regulator
           protein
          Length = 544

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 162/419 (38%), Positives = 238/419 (56%), Gaps = 30/419 (7%)

Query: 1   VRGKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVT--- 57
           V GK    LT  A  +L +D  D +Y+ VR+S G+ + GD   P    V AP    T   
Sbjct: 118 VNGKVVTRLTGAATDILHADDIDNVYYQVRNSFGDVVEGDMEIPLPKDVEAPPPWSTQFR 177

Query: 58  YDGVMNGEQVRIAVLYV-----------SIERTPIYIGIAETFRKRNQTHYVILISLLLL 106
           YD + N E VRIA +YV           SIE     + +AET  KR+Q    I+  +++ 
Sbjct: 178 YDFIRNTE-VRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVP 236

Query: 107 DGALTFFSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSL 166
           +  +   ++ +V  A+ +GL PL EL+Q + +R  D+L+PI+     EE+ P++G++N +
Sbjct: 237 EFIILPIALVLVWFALTRGLRPLVELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEM 296

Query: 167 LENIRKGASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERM 226
           LE + +    Q+ F+A+ AHQ++TPL G+R+Q E L  R  D+ E   S E +  S +  
Sbjct: 297 LERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSE-LALRQTDQVEIHKSLEQLAKSSKSA 355

Query: 227 VRQSNQLLALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQP---A 283
            R  NQLLALARAE        L+ L L +L  ++VQ +++ +  K+IDLGF+ QP    
Sbjct: 356 TRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFE-QPDYHI 414

Query: 284 RMKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATL--LTVEDSGPGIAPEHRE 341
            + GD  MLR+L++NL+DNA+ Y+P     TV  R  E+A L  L VED+GPGIAP   +
Sbjct: 415 MVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHK 474

Query: 342 LIFDRFYRV-NDKIAGSGLGLAIVRDIAKDHGGEITLTSGEANC------GTIFTVRFP 393
            IF+RFYR+    + GSGLGLAIVR+IA+ HG EI + +   NC      G +  +  P
Sbjct: 475 RIFERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDILNN-PNCTNPKAPGCLMRITLP 532


>Q47IZ4.1 Q47IZ4_DECAR ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal
          Length = 501

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 11/402 (2%)

Query: 1   VRGKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFP----PVNHVTAPNEPV 56
           V GK  L L   A  +LR+D  D++YF V   +G  LAGD   P    P++      E  
Sbjct: 73  VNGKPQLSLPASARALLRADETDSVYFHVVTFDGRFLAGDKELPLSQLPLDDAMVSGEIY 132

Query: 57  TYDGVMNGEQVRIAVLYVSIERTP----IYIGIAETFRKRNQTHYVILISLLLLDGALTF 112
             D    G+ +R+A  Y++    P    + I + ET  KR+Q    I+ S++L    +  
Sbjct: 133 QRDADFKGQDLRMAYTYLAEPNMPKSQWVVIEVGETTEKRSQLANKIVASVILPQFIIIP 192

Query: 113 FSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRK 172
            ++ +V   +++GL PL  LRQ +D R  D+L+PI  +   EEL P++ A N +LE +++
Sbjct: 193 LAVMLVWFGLSRGLRPLTRLRQTIDARQPDDLSPIATRRVPEELEPLVEAFNEMLERMKR 252

Query: 173 GASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQ 232
              AQQ F+A+ AHQ+RTPLTGL+ Q +    R  D     H+   + + V+R  R  NQ
Sbjct: 253 SVEAQQRFVADAAHQLRTPLTGLKTQAQ-FAIRETDPEALRHALRQIATGVDRAGRLVNQ 311

Query: 233 LLALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQ-PARMKGDRFM 291
           LL LAR E         E L L  LV E V+ ++  A +K IDLG++ + PA + G+ F+
Sbjct: 312 LLTLARTEGGELAQRRHEPLDLSLLVREVVEDWVTVAIEKDIDLGYESEGPAMISGNSFL 371

Query: 292 LRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVN 351
           LR+L  NL+DNA+RY+P    VT       D  LL VED+G GI+ E  +L+F+RFYRV+
Sbjct: 372 LRELAKNLIDNALRYTPAGGRVTCRVVVNPDTVLLEVEDNGVGISEEQADLVFERFYRVD 431

Query: 352 D-KIAGSGLGLAIVRDIAKDHGGEITLTSGEANCGTIFTVRF 392
           D    GSGLGLAIV++IA  H    +L       G I  + F
Sbjct: 432 DASTEGSGLGLAIVQEIAMQHDSRASLRPNPLGKGAIARIAF 473


>Q1H1R1.1 Q1H1R1_METFK Periplasmic sensor signal transduction histidine
           kinase
          Length = 452

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 226/381 (59%), Gaps = 9/381 (2%)

Query: 16  MLRS--DHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVMNGEQVRIAVLY 73
           +LRS  D++D     + D  G+ LAG  + P +   +A ++P  YD    G+ +R+  + 
Sbjct: 75  LLRSEQDNYDAAKAAIFDLQGQFLAGVADLP-IQLPSADHKPYFYDAEYQGDPIRVVAIK 133

Query: 74  VSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAVNKGLSPLRELR 133
             +    +Y+  AET  KRN+     LI +++ +     FSI ++ + V +GL PL ++R
Sbjct: 134 SPVLDAVLYL--AETTYKRNRLVQKTLIHMIVPELVFAVFSIVVLWVGVGRGLQPLAQIR 191

Query: 134 QNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLANVAHQIRTPLT 193
             ++ R+  +L+P++  +   E+  +I A+NSLL  + +    Q  FLAN AHQ+RTPL 
Sbjct: 192 AQINARSETDLSPMDEGKAPVEVREIIVALNSLLARLDRSLKLQNQFLANAAHQLRTPLA 251

Query: 194 GLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPSRFKPTHLEDLL 253
           GL++QLE   ++  +E   +H  E M  S  R+VR +NQLLALARAE    +     +L 
Sbjct: 252 GLQMQLELASEQSPEERMQSH--ERMLVSTRRIVRLANQLLALARAE-GEGEVNKFAELD 308

Query: 254 LDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDNAVRYSPPQSTV 313
           +   +E     ++ +AD K IDLGFDL PA++ G  + +++++ NLVDNA+RY+P    +
Sbjct: 309 ISNAIEAMATEWLLRADAKSIDLGFDLYPAKVSGSLWQIQEMLANLVDNALRYTPMHGNI 368

Query: 314 TVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLAIVRDIAKDHGG 373
           T+ C++QE   ++ VED+GPGI  +  E +F+RFYR+++   G GLGL+IVR+I + HGG
Sbjct: 369 TIRCKQQEQKVVIEVEDNGPGIPQDQHENVFNRFYRLDEDPEGCGLGLSIVREIVRHHGG 428

Query: 374 EITL-TSGEANCGTIFTVRFP 393
           ++TL T      G +  ++ P
Sbjct: 429 QVTLQTPVHHGQGLLVRIQLP 449