BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0047.p         (287 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J285.1 D8J285_HERSS ABC-type nitrate/sulfonate/bicarbonate tra...   454   e-126
E8YVQ5.1 E8YVQ5_9BURK Binding-protein-dependent transport system...   431   e-119
B2JP81.1 B2JP81_BURP8 Binding-protein-dependent transport system...   430   e-119
B1FU37.1 B1FU37_9BURK Binding-protein-dependent transport system...   430   e-119
D5WJQ2.1 D5WJQ2_BURSC Binding-protein-dependent transport system...   419   e-115

>D8J285.1 D8J285_HERSS ABC-type nitrate/sulfonate/bicarbonate transport
           system, permease component protein
          Length = 284

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/284 (85%), Positives = 259/284 (91%)

Query: 4   MTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWIDPF 63
           MTQ   S++ +   IA VE EAQRKI+ R  LVI LR+AILVI+LGGWE+ A + WIDPF
Sbjct: 1   MTQAQASQSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPF 60

Query: 64  FFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRNKLM 123
           FFSQPSLIV QIYDW++EGTSQGPLW QV+VTLEETVLGFLIGSVAG+IAGI LGRNKL+
Sbjct: 61  FFSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLL 120

Query: 124 SDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY 183
           SDVFSLYIQIANSIPRVVLGSIFVIA GLGMASKVALAVVMVFFVVF NAFQGVREADRY
Sbjct: 121 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY 180

Query: 184 MIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 243
           MIANAQILGASRRQVT AVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS
Sbjct: 181 MIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240

Query: 244 TAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAAF 287
           TAQGAFNASGVFAAMIVLAVVAL AD+LL +LE+RLLKWRP AF
Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF 284


>E8YVQ5.1 E8YVQ5_9BURK Binding-protein-dependent transport systems inner
           membrane component
          Length = 287

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/286 (79%), Positives = 254/286 (88%)

Query: 1   VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60
           +S   Q      + P ++ +VER AQ++I+QR  LVISLR+A+LV++LGGWEL+A ++WI
Sbjct: 1   MSTTPQQTMPAGLDPASLEQVERAAQKRIRQRQLLVISLRIAVLVVVLGGWELAARLKWI 60

Query: 61  DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120
           DPFFFS PS I  QI +W + GTSQGPL  QV VTLEET LGF+IGSVAG+  GI LGRN
Sbjct: 61  DPFFFSMPSAIFDQIVEWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRN 120

Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180
           KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA
Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180

Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240
           DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL
Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240

Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAA 286
           LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRPAA
Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRPAA 286


>B2JP81.1 B2JP81_BURP8 Binding-protein-dependent transport systems inner
           membrane component
          Length = 287

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/284 (80%), Positives = 253/284 (89%)

Query: 1   VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60
           +S   Q      + P ++A+VER AQ++I+QR  LVI LR+A+LV++LGGWE+SA M+WI
Sbjct: 1   MSTTPQQMMPAGLDPTSLAQVERIAQKRIRQRNALVIGLRIAVLVLVLGGWEISARMKWI 60

Query: 61  DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120
           DPFFFS PSLI  QI DW + GTSQGPL  QV VTLEET LGF+IGSVAG+  GI LGRN
Sbjct: 61  DPFFFSMPSLIFEQIVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRN 120

Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180
           KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA
Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180

Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240
           DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL
Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240

Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRP 284
           LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRP
Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRP 284


>B1FU37.1 B1FU37_9BURK Binding-protein-dependent transport systems inner
           membrane component
          Length = 287

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/286 (80%), Positives = 252/286 (88%)

Query: 1   VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60
           +S   Q      +   ++  VER AQ++I+QR  LVISLR+A+LV++LGGWELSA ++WI
Sbjct: 1   MSTTPQQTMPTGIDTASLEHVERVAQKRIRQRQLLVISLRIAVLVVVLGGWELSARLKWI 60

Query: 61  DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120
           DPFFFS PS I  QI DW + GTSQGPL  QV VTLEET LGF+IGSVAGI  GI LGRN
Sbjct: 61  DPFFFSMPSAIFDQIVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGIFCGIVLGRN 120

Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180
           KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA
Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180

Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240
           DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL
Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240

Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAA 286
           LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRPAA
Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRPAA 286


>D5WJQ2.1 D5WJQ2_BURSC Binding-protein-dependent transport systems inner
           membrane component
          Length = 287

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/284 (81%), Positives = 251/284 (88%), Gaps = 5/284 (1%)

Query: 8   NTSRAMSPEAI-----AEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWIDP 62
             S+ M P  I     A VER AQ+KI+QR  LVISLR+ +LV++LGGWELSA ++WIDP
Sbjct: 3   TPSQQMMPAGIDAASLAHVERVAQKKIRQRQVLVISLRILVLVVVLGGWELSARLKWIDP 62

Query: 63  FFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRNKL 122
           FFFS PS I  QI DW + GTSQGPL  QV VTLEET LGF+IGSVAGI+ GI LGRNKL
Sbjct: 63  FFFSMPSAIFEQIVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGIVCGIVLGRNKL 122

Query: 123 MSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADR 182
           +SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREADR
Sbjct: 123 LSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREADR 182

Query: 183 YMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLI 242
           YMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLI
Sbjct: 183 YMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLI 242

Query: 243 STAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAA 286
           STAQGAFNASGVFAAMIVLAVVAL ADYLLT++E RLLKWRP++
Sbjct: 243 STAQGAFNASGVFAAMIVLAVVALAADYLLTAVEHRLLKWRPSS 286