BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0040.p (240 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J289.1 D8J289_HERSS Response regulator consisting of a CheY-li... 395 e-108 B2TEA1.1 B2TEA1_BURPP Two component transcriptional regulator, w... 319 2e-85 Q13KD8.1 Q13KD8_BURXL Two component transcriptional regulator, w... 319 2e-85 D8NUG8.1 D8NUG8_RALSO Putative response regulator, CheY family 319 3e-85 B5WIW8.1 B5WIW8_9BURK Two component transcriptional regulator, w... 318 3e-85 >D8J289.1 D8J289_HERSS Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein Length = 222 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/222 (84%), Positives = 208/222 (93%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDNP LAHWL QIL+E+KF VD+A+DGE+AD VL ENYDVVLLDLMLPK+HGK Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 NVLRRLRERHN VPVMILTASGSIDEKVECLGAGADDYLVKPFE+RELVARIKVL+RRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 PDKAAEIHCG+L YDSNTRQFA+ G TLALPAREHDVLE+L+L+QGKTVSK AL+ G+FS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKD 236 LS+EPSADAIE+YISRLRKKL+ S AAIMTLRGLGYLL+Q+D Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >B2TEA1.1 B2TEA1_BURPP Two component transcriptional regulator, winged helix family Length = 225 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 187/225 (83%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDNP LAHWL ++L + F++D DG+ AD +L T +YDV+LLDL LPK+ GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 NVLRRLR+R +A PV+ILTASGSIDEKVE LGAGADDYLVKPFEVREL+ARIKV IRRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 P KA+E+ CGDL++D +TRQF + G L + RE VLE L+L+ GKTV+K ALV+ IF+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKDDSQ 239 L+DEPS DA+EIYISRLRKKL+ S AAI+TLRGLGYLL++K+D Q Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKEDDQ 225 >Q13KD8.1 Q13KD8_BURXL Two component transcriptional regulator, winged helix family Length = 225 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 187/225 (83%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDNP LAHWL ++L + F++D DG+ AD +L T +YDV+LLDL LPK+ GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 NVLRRLR+R +A PV+ILTASGSIDEKVE LGAGADDYLVKPFEVREL+ARIKV IRRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 P KA+E+ CGDL++D +TRQF + G L + RE VLE L+L+ GKTV+K ALV+ IF+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKDDSQ 239 L+DEPS DA+EIYISRLRKKL+ S AAI+TLRGLGYLL++K+D Q Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKEDDQ 225 >D8NUG8.1 D8NUG8_RALSO Putative response regulator, CheY family Length = 224 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/219 (71%), Positives = 182/219 (83%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDN PLA WL++ LR +F+VD ASDGE AD +L T++YDVVLLDL LP + G+ Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 VL+RLR+R NAVPVMILTASG ID+KV CLGAGADDYLVKPFE+REL+ARI+VL+RR T Sbjct: 61 AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 P A E+ CGDLSY S +R FA+AG+ L LPAREH VLEILMLK G+TVSK ALVNG+F Sbjct: 121 PANAVELQCGDLSYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLK 233 L D+ S +AIEIYI RLRKKLE S A I+TLRGLGYLL+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLR 219 >B5WIW8.1 B5WIW8_9BURK Two component transcriptional regulator, winged helix family Length = 225 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 154/225 (68%), Positives = 186/225 (82%) Query: 15 MKLLLIEDNPPLAHWLTQILRENKFSVDVASDGEMADHVLHTENYDVVLLDLMLPKMHGK 74 MKLLLIEDNP LAHWL ++L + F++D DG+ AD +L T +YDV+LLDL LPK+ GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 75 NVLRRLRERHNAVPVMILTASGSIDEKVECLGAGADDYLVKPFEVRELVARIKVLIRRQT 134 NVLRRLR+R +A PV+ILTASGSIDEKVE LGAGADDYLVKPFEVREL+ARIKV IRRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 135 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFS 194 P KA E+ CGDLS+D +TRQF + G L + RE VLE L+L+ GKTV+K ALV+ IF+ Sbjct: 121 PSKAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 195 LSDEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKDDSQ 239 L+DEPS DA+EIYISRLRKKL+ S AAI+TLRGLGYLL++K+D Q Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKEDDQ 225