BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0036.p         (149 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IPJ9.1 D8IPJ9_HERSS Ribonuclease HI protein EC=3.1.26.4             246   8e-64
A0SZ38.1 A0SZ38_9BURK RNase H EC=3.1.26.4                             246   8e-64
A4G7G3.1 RNH_HERAR Ribonuclease H EC=3.1.26.4                         242   2e-62
A6SXA4.1 RNH_JANMA Ribonuclease H EC=3.1.26.4                         240   4e-62
F1VTY0.1 F1VTY0_9BURK Ribonuclease HI                                 237   4e-61

>D8IPJ9.1 D8IPJ9_HERSS Ribonuclease HI protein EC=3.1.26.4
          Length = 143

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 131/143 (91%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIY+DGACKGNPG GGWGALL+AGG+EKE+ GGE NTTNNRMEL AVI+AL AL R
Sbjct: 1   MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTA++EPVKN DLWQALDAAQ QH++EWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GH GNERADQLANRGV+++
Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143


>A0SZ38.1 A0SZ38_9BURK RNase H EC=3.1.26.4
          Length = 145

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 129/143 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIYADGACKGNPGTGGWGAL++A G +KE+ GGE NTTNNRMELKAVIEAL AL R
Sbjct: 1   MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C V +YTDSQYVQKGISEWIHGWKARGWKTAA+ PVKNVDLWQALD AQA H++EWRWV
Sbjct: 61  PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GHPGNERADQLAN GV+TV
Sbjct: 121 RGHNGHPGNERADQLANLGVETV 143


>A4G7G3.1 RNH_HERAR Ribonuclease H EC=3.1.26.4
          Length = 146

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 129/143 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +++++I+ DGACKGNPG GGWGALL+ G REKEL GGE  TTNNRMELKAVIEAL ALTR
Sbjct: 1   MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTAAR PVKNVDLWQALDAAQA+H+IEWRWV
Sbjct: 61  PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GH GNERAD LANRGV+TV
Sbjct: 121 RGHNGHVGNERADALANRGVETV 143


>A6SXA4.1 RNH_JANMA Ribonuclease H EC=3.1.26.4
          Length = 144

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 128/142 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+++IY+DGACKGNPG GGWGALL+ G REKE+ GGE +TTNNRMELKAVIEAL  LTR
Sbjct: 1   MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTAA+ PVKNVDLWQALDAAQA+HKIEWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDT 147
           +GH GH GNERAD LANRGV+ 
Sbjct: 121 RGHNGHAGNERADALANRGVEV 142


>F1VTY0.1 F1VTY0_9BURK Ribonuclease HI
          Length = 144

 Score =  237 bits (604), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 127/143 (88%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +++VEIY DGACKGNPG GGWGA L+AG  EKEL GGER+TTNNRMELKAVIEAL AL R
Sbjct: 1   MEKVEIYTDGACKGNPGRGGWGAWLVAGTNEKELFGGERDTTNNRMELKAVIEALTALRR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            CDV V+TDSQYVQKGISEWI+GWK RGWKTAAREPVKNVDLWQALD AQ  H+I+WRWV
Sbjct: 61  PCDVIVHTDSQYVQKGISEWINGWKKRGWKTAAREPVKNVDLWQALDLAQQMHQIQWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH+GH GNERAD LANRGVD++
Sbjct: 121 RGHSGHVGNERADVLANRGVDSI 143